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Marina Sirota
Marina Sirota
Professor, Acting Director, Bakar Computational Health Sciences Institute, UCSF
Bestätigte E-Mail-Adresse bei ucsf.edu
Titel
Zitiert von
Zitiert von
Jahr
Evolution of genes and genomes on the Drosophila phylogeny
AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ...
Nature 450 (7167), 203-18, 2007
22872007
Identifying a high fraction of the human genome to be under selective constraint using GERP++
EV Davydov, DL Goode, M Sirota, GM Cooper, A Sidow, S Batzoglou
PLoS computational biology 6 (12), e1001025, 2010
19482010
Ten years of pathway analysis: current approaches and outstanding challenges
P Khatri, M Sirota, AJ Butte
PLoS computational biology 8 (2), e1002375, 2012
18182012
Systematic pan-cancer analysis of tumour purity
D Aran, M Sirota, AJ Butte
Nature communications 6 (1), 8971, 2015
11092015
Discovery and preclinical validation of drug indications using compendia of public gene expression data
M Sirota, JT Dudley, J Kim, AP Chiang, AA Morgan, A Sweet-Cordero, ...
Science translational medicine 3 (96), 96ra77-96ra77, 2011
9012011
Computational repositioning of the anticonvulsant topiramate for inflammatory bowel disease
JT Dudley, M Sirota, M Shenoy, RK Pai, S Roedder, AP Chiang, ...
Science translational medicine 3 (96), 96ra76-96ra76, 2011
6692011
Comprehensive analysis of normal adjacent to tumor transcriptomes
D Aran, R Camarda, J Odegaard, H Paik, B Oskotsky, G Krings, A Goga, ...
Nature communications 8 (1), 1077, 2017
5472017
Immunoglobulin class-switched B cells form an active immune axis between CNS and periphery in multiple sclerosis
A Palanichamy, L Apeltsin, TC Kuo, M Sirota, S Wang, SJ Pitts, ...
Science translational medicine 6 (248), 248ra106-248ra106, 2014
2662014
B cell exchange across the blood-brain barrier in multiple sclerosis
H von Büdingen, TC Kuo, M Sirota, CJ van Belle, L Apeltsin, J Glanville, ...
The Journal of Clinical Investigation, 2012
2622012
Non-synonymous and synonymous coding SNPs show similar likelihood and effect size of human disease association
R Chen, EV Davydov, M Sirota, AJ Butte
PloS one 5 (10), e13574, 2010
2212010
Cross-tissue analysis of gene and protein expression in normal and cancer tissues
I Kosti, N Jain, D Aran, AJ Butte, M Sirota
Scientific reports 6 (1), 24799, 2016
2172016
Reversal of cancer gene expression correlates with drug efficacy and reveals therapeutic targets
B Chen, L Ma, H Paik, M Sirota, W Wei, MS Chua, S So, AJ Butte
Nature communications 8 (1), 16022, 2017
1962017
Autoimmune disease classification by inverse association with SNP alleles
M Sirota, MA Schaub, S Batzoglou, WH Robinson, AJ Butte
PLoS genetics 5 (12), e1000792, 2009
1922009
Expression-based genome-wide association study links the receptor CD44 in adipose tissue with type 2 diabetes
K Kodama, M Horikoshi, K Toda, S Yamada, K Hara, J Irie, M Sirota, ...
Proceedings of the National Academy of Sciences 109 (18), 7049-7054, 2012
1882012
Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy
MS Ghaemi, DB DiGiulio, K Contrepois, B Callahan, TTM Ngo, ...
Bioinformatics 35 (1), 95-103, 2019
1752019
dittoSeq: universal user-friendly single-cell and bulk RNA sequencing visualization toolkit
DG Bunis, J Andrews, GK Fragiadakis, TD Burt, M Sirota
Bioinformatics 36 (22-23), 5535-5536, 2020
1492020
The genetic basis of endometriosis and comorbidity with other pain and inflammatory conditions
N Rahmioglu, S Mortlock, M Ghiasi, PL Møller, L Stefansdottir, ...
Nature genetics 55 (3), 423-436, 2023
1452023
Mortality risk among patients with COVID-19 prescribed selective serotonin reuptake inhibitor antidepressants
T Oskotsky, I Marić, A Tang, B Oskotsky, RJ Wong, N Aghaeepour, ...
JAMA network open 4 (11), e2133090-e2133090, 2021
1452021
Comprehensive transcriptomic analysis of cell lines as models of primary tumors across 22 tumor types
K Yu, B Chen, D Aran, J Charalel, C Yau, DM Wolf, LJ Van ‘T Veer, ...
Nature communications 10 (1), 3574, 2019
1452019
CONTRAST: a discriminative, phylogeny-free approach to multiple informant de novogene prediction
SS Gross, CB Do, M Sirota, S Batzoglou
Genome biology 8, 1-16, 2007
1352007
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