| Getting up to speed with transcription elongation by RNA polymerase II I Jonkers, JT Lis Nature reviews Molecular cell biology 16 (3), 167-177, 2015 | 972 | 2015 |
| Genome-wide dynamics of Pol II elongation and its interplay with promoter proximal pausing, chromatin, and exons I Jonkers, H Kwak, JT Lis elife 3, e02407, 2014 | 645 | 2014 |
| Base-pair-resolution genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq) DB Mahat, H Kwak, GT Booth, IH Jonkers, CG Danko, RK Patel, ... Nature protocols 11 (8), 1455-1476, 2016 | 499 | 2016 |
| Disease variants alter transcription factor levels and methylation of their binding sites MJ Bonder, R Luijk, DV Zhernakova, M Moed, P Deelen, M Vermaat, ... Nature genetics 49 (1), 131-138, 2017 | 493 | 2017 |
| RNF12 is an X-Encoded dose-dependent activator of X chromosome inactivation I Jonkers, TS Barakat, EM Achame, K Monkhorst, A Kenter, ... Cell 139 (5), 999-1011, 2009 | 271 | 2009 |
| CTCF regulates cell cycle progression of αβ T cells in the thymus H Heath, CR De Almeida, F Sleutels, G Dingjan, S Van De Nobelen, ... The EMBO journal 27 (21), 2839-2850, 2008 | 214 | 2008 |
| X chromosome inactivation is initiated in human preimplantation embryos IM van den Berg, JSE Laven, M Stevens, I Jonkers, RJ Galjaard, ... The American Journal of Human Genetics 84 (6), 771-779, 2009 | 198 | 2009 |
| X inactivation counting and choice is a stochastic process: evidence for involvement of an X-linked activator K Monkhorst, I Jonkers, E Rentmeester, F Grosveld, J Gribnau Cell 132 (3), 410-421, 2008 | 195 | 2008 |
| A practical view of fine-mapping and gene prioritization in the post-genome-wide association era RV Broekema, OB Bakker, IH Jonkers Open Biology 10 (1), 2046-2441, 2020 | 147 | 2020 |
| Understanding celiac disease by genomics S Withoff, Y Li, I Jonkers, C Wijmenga Trends in Genetics 32 (5), 295-308, 2016 | 121 | 2016 |
| CTCF regulates the local epigenetic state of ribosomal DNA repeats S van de Nobelen, M Rosa-Garrido, J Leers, H Heath, W Soochit, ... Epigenetics & chromatin 3, 1-21, 2010 | 120 | 2010 |
| A liver‐specific long noncoding RNA with a role in cell viability is elevated in human nonalcoholic steatohepatitis B Atanasovska, SS Rensen, MR van der Sijde, G Marsman, V Kumar, ... Hepatology 66 (3), 794-808, 2017 | 104 | 2017 |
| Xist RNA is confined to the nuclear territory of the silenced X chromosome throughout the cell cycle I Jonkers, K Monkhorst, E Rentmeester, JA Grootegoed, F Grosveld, ... Molecular and cellular biology, 2008 | 104 | 2008 |
| Refined mapping of autoimmune disease associated genetic variants with gene expression suggests an important role for non-coding RNAs I Ricaño-Ponce, DV Zhernakova, P Deelen, O Luo, X Li, A Isaacs, ... Journal of autoimmunity 68, 62-74, 2016 | 91 | 2016 |
| Understanding human immune function using the resources from the Human Functional Genomics Project MG Netea, LAB Joosten, Y Li, V Kumar, M Oosting, S Smeekens, ... Nature medicine 22 (8), 831-833, 2016 | 76 | 2016 |
| X-changing information on X inactivation TS Barakat, I Jonkers, K Monkhorst, J Gribnau Experimental cell research 316 (5), 679-687, 2010 | 68 | 2010 |
| Deconvolution of bulk blood eQTL effects into immune cell subpopulations R Aguirre-Gamboa, N de Klein, J di Tommaso, A Claringbould, ... BMC bioinformatics 21, 1-23, 2020 | 58 | 2020 |
| Kinetics of Xist-induced gene silencing can be predicted from combinations of epigenetic and genomic features LBA e Sousa, I Jonkers, L Syx, I Dunkel, J Chaumeil, C Picard, B Foret, ... Genome research 29 (7), 1087-1099, 2019 | 53 | 2019 |
| Context-specific effects of genetic variants associated with autoimmune disease IH Jonkers, C Wijmenga Human molecular genetics 26 (R2), R185-R192, 2017 | 53 | 2017 |
| Integration of metabolomics, genomics, and immune phenotypes reveals the causal roles of metabolites in disease X Chu, M Jaeger, J Beumer, OB Bakker, R Aguirre-Gamboa, M Oosting, ... Genome biology 22, 1-22, 2021 | 52 | 2021 |