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| Computation and visualization of cell–cell signaling topologies in single-cell systems data using Connectome MSB Raredon, J Yang, J Garritano, M Wang, D Kushnir, JC Schupp, ... Scientific Reports 12 (1), 4187, 2022 | 108 | 2022 |
| NIH SenNet Consortium to map senescent cells throughout the human lifespan to understand physiological health Brown University TDA Wang Siyuan (Steven) 34, ... Nature aging 2 (12), 1090-1100, 2022 | 80 | 2022 |
| Comprehensive visualization of cell–cell interactions in single-cell and spatial transcriptomics with NICHES MSB Raredon, J Yang, N Kothapalli, W Lewis, N Kaminski, LE Niklason, ... Bioinformatics 39 (1), btac775, 2023 | 67 | 2023 |
| Locally sparse neural networks for tabular biomedical data J Yang, O Lindenbaum, Y Kluger International Conference on Machine Learning, 25123-25153, 2022 | 37 | 2022 |
| Multi-modal differentiable unsupervised feature selection J Yang, O Lindenbaum, Y Kluger, A Jaffe Uncertainty in Artificial Intelligence, 2400-2410, 2023 | 5 | 2023 |
| Longitudinal single-cell analysis of a patient receiving adoptive cell therapy reveals potential mechanisms of treatment failure R Qu, Y Kluger, J Yang, J Zhao, DA Hafler, DS Krause, A Bersenev, ... Molecular Cancer 21 (1), 219, 2022 | 5 | 2022 |
| The single-cell opioid responses in the context of HIV (SCORCH) consortium SA Ament, RR Campbell, MK Lobo, JP Receveur, K Agrawal, A Borjabad, ... Molecular Psychiatry, 1-12, 2024 | 3 | 2024 |
| Organ Boundary Circuits Regulate Sox9+ Alveolar Tuft Cells During Post-Pneumonectomy Lung Regeneration T Obata, S Mizoguchi, AM Greaney, T Adams, Y Yuan, S Edelstein, ... bioRxiv, 2024 | 2 | 2024 |
| Computational prediction and functional analysis of arsenic‐binding proteins in human cells S Pang, J Yang, Y Zhao, Y Li, J Wang Quantitative Biology 7 (3), 182-189, 2019 | 1 | 2019 |
| Multi-omic Characterization of HIV Effects at Single Cell Level across Human Brain Regions J Yang, K Agrawal, JS Stanley III, R Li, N Jacobs, H Wang, C Lu, R Qu, ... bioRxiv, 2025.02. 05.636707, 2025 | | 2025 |
| Principled PCA separates signal from noise in omics count data JS Stanley III, J Yang, R Li, O Lindenbaum, D Kobak, B Landa, Y Kluger bioRxiv, 2025.02. 03.636129, 2025 | | 2025 |
