| Cytoscape StringApp: network analysis and visualization of proteomics data NT Doncheva, JH Morris, J Gorodkin, LJ Jensen Journal of proteome research 18 (2), 623-632, 2018 | 1807 | 2018 |
| Analyses of pig genomes provide insight into porcine demography and evolution MAM Groenen, AL Archibald, H Uenishi, CK Tuggle, Y Takeuchi, ... Nature 491 (7424), 393-398, 2012 | 1551 | 2012 |
| Comparing two K-category assignments by a K-category correlation coefficient J Gorodkin Computational biology and chemistry 28 (5-6), 367-374, 2004 | 587 | 2004 |
| Pigs in sequence space: a 0.66 X coverage pig genome survey based on shotgun sequencing R Wernersson, MH Schierup, FG Jørgensen, J Gorodkin, F Panitz, ... BMC genomics 6, 1-7, 2005 | 387 | 2005 |
| Finding the most significant common sequence and structure motifs in a set of RNA sequences J Gorodkin, LJ Heyer, GD Stormo Nucleic acids research 25 (18), 3724-3732, 1997 | 290 | 1997 |
| Profiling of ribose methylations in RNA by high‐throughput sequencing U Birkedal, M Christensen‐Dalsgaard, N Krogh, R Sabarinathan, ... Angewandte Chemie International Edition 54 (2), 451-455, 2015 | 286 | 2015 |
| RNAcentral: a hub of information for non-coding RNA sequences Nucleic Acids Research 47 (D1), D221-D229, 2019 | 259 | 2019 |
| RNAcentral 2021: secondary structure integration, improved sequence search and new member databases Nucleic acids research 49 (D1), D212-D220, 2021 | 241 | 2021 |
| TISSUES 2.0: an integrative web resource on mammalian tissue expression O Palasca, A Santos, C Stolte, J Gorodkin, LJ Jensen Database 2018, bay003, 2018 | 220 | 2018 |
| Protein-driven inference of miRNA–disease associations S Mørk, S Pletscher-Frankild, A Palleja Caro, J Gorodkin, LJ Jensen Bioinformatics 30 (3), 392-397, 2014 | 218 | 2014 |
| Displaying the in formation contents of structural RNA alignments: the structure logos J Gorodkin, LJ Heyer, S Brunak, GD Stormo Bioinformatics 13 (6), 583-586, 1997 | 216 | 1997 |
| Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure E Torarinsson, M Sawera, JH Havgaard, M Fredholm, J Gorodkin Genome research 16 (7), 885-889, 2006 | 215 | 2006 |
| Multiple structural alignment and clustering of RNA sequences E Torarinsson, JH Havgaard, J Gorodkin Bioinformatics 23 (8), 926-932, 2007 | 203 | 2007 |
| Protein distance constraints predicted by neural networks and probability density functions. O Lund, K Frimand, J Gorodkin, H Bohr, J Bohr, J Hansen, S Brunak Protein Engineering 10 (11), 1241-1248, 1997 | 200 | 1997 |
| Pairwise local structural alignment of RNA sequences with sequence similarity less than 40% JH Havgaard, RB Lyngsø, GD Stormo, J Gorodkin Bioinformatics 21 (9), 1815-1824, 2005 | 198 | 2005 |
| Transcriptomic landscape of lncRNAs in inflammatory bowel disease AH Mirza, CHB Berthelsen, SE Seemann, X Pan, KS Frederiksen, ... Genome medicine 7, 1-22, 2015 | 187 | 2015 |
| Discovering common stem–loop motifs in unaligned RNA sequences J Gorodkin, SL Stricklin, GD Stormo Nucleic Acids Research 29 (10), 2135-2144, 2001 | 186 | 2001 |
| RNA snp: efficient detection of local RNA secondary structure changes induced by SNP s R Sabarinathan, H Tafer, SE Seemann, IL Hofacker, PF Stadler, ... Human mutation 34 (4), 546-556, 2013 | 176 | 2013 |
| CRISPR-Cas9 off-targeting assessment with nucleic acid duplex energy parameters F Alkan, A Wenzel, C Anthon, JH Havgaard, J Gorodkin Genome biology 19, 1-13, 2018 | 160 | 2018 |
| RNA interactions in the 5′ region of the HIV-1 genome CK Damgaard, ES Andersen, B Knudsen, J Gorodkin, J Kjems Journal of molecular biology 336 (2), 369-379, 2004 | 157 | 2004 |
