| Standardized annotation of translated open reading frames JM Mudge, J Ruiz-Orera, JR Prensner, MA Brunet, F Calvet, I Jungreis, ... Nature biotechnology 40 (7), 994-999, 2022 | 165 | 2022 |
| OpenProt: a more comprehensive guide to explore eukaryotic coding potential and proteomes MA Brunet, M Brunelle, JF Lucier, V Delcourt, M Levesque, F Grenier, ... Nucleic acids research 47 (D1), D403-D410, 2019 | 128 | 2019 |
| OpenProt 2021: deeper functional annotation of the coding potential of eukaryotic genomes MA Brunet, JF Lucier, M Levesque, S Leblanc, JF Jacques, HRH Al-Saedi, ... Nucleic Acids Research 49 (D1), D380-D388, 2021 | 97 | 2021 |
| Recognition of the polycistronic nature of human genes is critical to understanding the genotype-phenotype relationship MA Brunet, SA Levesque, DJ Hunting, AA Cohen, X Roucou Genome research 28 (5), 609-624, 2018 | 72 | 2018 |
| UBB pseudogene 4 encodes functional ubiquitin variants ML Dubois, A Meller, S Samandi, M Brunelle, J Frion, MA Brunet, ... Nature Communications 11 (1), 1306, 2020 | 52 | 2020 |
| Reconsidering proteomic diversity with functional investigation of small ORFs and alternative ORFs MA Brunet, S Leblanc, X Roucou Experimental cell research 393 (1), 112057, 2020 | 49 | 2020 |
| The FUS gene is dual‐coding with both proteins contributing to FUS‐mediated toxicity MA Brunet, JF Jacques, S Nassari, GE Tyzack, P McGoldrick, L Zinman, ... EMBO reports 22 (1), e50640, 2021 | 47 | 2021 |
| Conservation of physiological dysregulation signatures of aging across primates G Dansereau, TW Wey, V Legault, MA Brunet, JW Kemnitz, L Ferrucci, ... Aging cell 18 (2), e12925, 2019 | 30 | 2019 |
| OpenProt 2.0 builds a path to the functional characterization of alternative proteins S Leblanc, F Yala, N Provencher, JF Lucier, M Levesque, X Lapointe, ... Nucleic Acids Research 52 (D1), D522-D528, 2024 | 21 | 2024 |
| A community-driven roadmap to advance research on translated open reading frames detected by Ribo-seq JM Mudge, J Ruiz-Orera, JR Prensner, MA Brunet, JM Gonzalez, ... BioRxiv, 2021.06. 10.447896, 2021 | 20 | 2021 |
| A small protein coded within the mitochondrial canonical gene nd4 regulates mitochondrial bioenergetics L Kienzle, S Bettinazzi, T Choquette, M Brunet, HH Khorami, JF Jacques, ... Bmc Biology 21 (1), 111, 2023 | 18 | 2023 |
| A small protein coded within the mitochondrial canonical gene nd4 regulates mitochondrial bioenergetics L Kienzle, S Bettinazzi, T Choquette, MA Brunet, HH Khorami, JF Jacques, ... BMC Biology 21, 111, 2023 | 18 | 2023 |
| OpenCustomDB: Integration of Unannotated Open Reading Frames and Genetic Variants to Generate More Comprehensive Customized Protein Databases N Guilloy, MA Brunet, S Leblanc, JF Jacques, MP Hardy, G Ehx, J Lanoix, ... Journal of Proteome Research 22 (5), 1492-1500, 2023 | 13 | 2023 |
| Decoupling of mRNA and protein expression in aging brains reveals the age-dependent adaptation of specific gene subsets I Khatir, MA Brunet, A Meller, F Amiot, T Patel, X Lapointe, J Avila Lopez, ... Cells 12 (4), 615, 2023 | 13 | 2023 |
| Mass spectrometry-based proteomics analyses using the OpenProt database to unveil novel proteins translated from non-canonical open reading frames MA Brunet, X Roucou JoVE (Journal of Visualized Experiments), e59589, 2019 | 12 | 2019 |
| Modelling of pathogen-host systems using deeper ORF annotations and transcriptomics to inform proteomics analyses S Leblanc, MA Brunet Computational and structural biotechnology journal 18, 2836-2850, 2020 | 11 | 2020 |
| Newfound coding potential of transcripts unveils missing members of human protein communities S Leblanc, MA Brunet, JF Jacques, AM Lekehal, A Duclos, A Tremblay, ... Genomics, Proteomics & Bioinformatics 21 (3), 515-534, 2023 | 8 | 2023 |
| Mosaic translation hypothesis: chimeric polypeptides produced via multiple ribosomal frameshifting as a basis for adaptability U Çakır, N Gabed, M Brunet, X Roucou, I Kryvoruchko The FEBS Journal 290 (2), 370-378, 2023 | 6 | 2023 |
| Proteomics Profiling of Stool Samples from Preterm Neonates with SWATH/DIA Mass Spectrometry for Predicting Necrotizing Enterocolitis D Gagné, E Shajari, MP Thibault, JF Noël, FM Boisvert, C Babakissa, ... International Journal of Molecular Sciences 23 (19), 11601, 2022 | 6 | 2022 |
| How to Illuminate the Dark Proteome Using the Multi‐omic OpenProt Resource MA Brunet, AM Lekehal, X Roucou Current Protocols in Bioinformatics 71 (1), e103, 2020 | 5 | 2020 |
