| Recurrently deregulated lncRNAs in hepatocellular carcinoma Y Yang, L Chen, J Gu, H Zhang, J Yuan, Q Lian, G Lv, S Wang, Y Wu, ... Nature communications 8 (1), 14421, 2017 | 310 | 2017 |
| HCCDB: a database of hepatocellular carcinoma expression atlas Q Lian, S Wang, G Zhang, D Wang, G Luo, J Tang, L Chen, J Gu Genomics, Proteomics and Bioinformatics 16 (4), 269-275, 2018 | 245 | 2018 |
| Comprehensive analysis of spatial architecture in primary liver cancer R Wu, W Guo, X Qiu, S Wang, C Sui, Q Lian, J Wu, Y Shan, Z Yang, ... Science Advances 7 (51), eabg3750, 2021 | 209 | 2021 |
| Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open … J Guinney, T Wang, TD Laajala, KK Winner, JC Bare, EC Neto, SA Khan, ... The Lancet Oncology 18 (1), 132-142, 2017 | 169 | 2017 |
| Modeling gene regulatory networks using neural network architectures H Shu, J Zhou, Q Lian, H Li, D Zhao, J Zeng, J Ma Nature Computational Science 1 (7), 491-501, 2021 | 123 | 2021 |
| GMM-Demux: sample demultiplexing, multiplet detection, experiment planning, and novel cell-type verification in single cell sequencing H Xin, Q Lian, Y Jiang, J Luo, X Wang, C Erb, Z Xu, X Zhang, ... Genome biology 21, 1-35, 2020 | 52 | 2020 |
| Discovery of a Carbamoyl Phosphate Synthetase 1–Deficient HCC Subtype With Therapeutic Potential Through Integrative Genomic and Experimental Analysis T Wu, G Luo, Q Lian, C Sui, J Tang, Y Zhu, B Zheng, Z Li, Y Zhang, ... Hepatology 74 (6), 3249-3268, 2021 | 37* | 2021 |
| Targeted sequencing reveals the mutational landscape responsible for sorafenib therapy in advanced hepatocellular carcinoma J Tang, CJ Sui, DF Wang, XY Lu, GJ Luo, Q Zhao, QY Lian, S Jeong, ... Theranostics 10 (12), 5384, 2020 | 24 | 2020 |
| TIST: transcriptome and histopathological image integrative analysis for spatial transcriptomics Y Shan, Q Zhang, W Guo, Y Wu, Y Miao, H Xin, Q Lian, J Gu Genomics, Proteomics and Bioinformatics 20 (5), 974-988, 2022 | 18 | 2022 |
| Artificial-cell-type aware cell-type classification in CITE-seq Q Lian, H Xin, J Ma, L Konnikova, W Chen, J Gu, K Chen Bioinformatics 36 (Supplement_1), i542-i550, 2020 | 16 | 2020 |
| The microbiota regulates hematopoietic stem and progenitor cell development by mediating inflammatory signals in the niche D Zhong, H Jiang, C Zhou, A Ahmed, H Li, X Wei, Q Lian, M Tastemel, ... Cell Reports 42 (2), 2023 | 13 | 2023 |
| Integrative molecular analysis of metastatic hepatocellular carcinoma D Wang, Y Zhu, J Tang, Q Lian, G Luo, W Wen, MQ Zhang, H Wang, ... BMC Medical Genomics 12, 1-12, 2019 | 13 | 2019 |
| Deficiency of carbamoyl phosphate synthetase 1 engenders radioresistance in hepatocellular carcinoma via deubiquitinating c-Myc S Zhang, Y Hu, Z Wu, X Zhou, T Wu, P Li, Q Lian, S Xu, J Gu, L Chen, ... International Journal of Radiation Oncology* Biology* Physics 115 (5), 1244-1256, 2023 | 10 | 2023 |
| Heterogeneous murine peribiliary glands orchestrate compartmentalized epithelial renewal S Singh, Q Lian, T Budiman, MM Taketo, BD Simons, V Gupta Developmental Cell 58 (23), 2732-2745. e5, 2023 | 7 | 2023 |
| HCCDB v2. 0: Decompose expression variations by single-cell RNA-seq and spatial transcriptomics in HCC Z Jiang, Y Wu, Y Miao, K Deng, F Yang, S Xu, Y Wang, R You, L Zhang, ... Genomics, Proteomics & Bioinformatics, qzae011, 2024 | 4 | 2024 |
| Spatial transcriptomics reveals heterogeneity of histological subtypes between lepidic and acinar lung adenocarcinoma L Xie, H Kong, J Yu, M Sun, S Lu, Y Zhang, J Hu, F Du, Q Lian, H Xin, ... Clinical and Translational Medicine 14 (2), e1573, 2024 | 4 | 2024 |
| Total-mRNA-Aware Analysis for Droplet-Based Single Cell Sequencing Q Lian, J Ma, K Hua, Z Rong, J Cai, X Jiang, J Zhou, J Xu, Z Zhang, L Fan, ... | 1 | 2022 |
| L2 Normalization and Geodesic Distance for Enhanced Information Preservation in Visualizing High-dimensional Single-cell Sequencing Data Z Rong, J Cai, J Qiu, P Xu, LX Garmire, Q Lian, H Xin Proceedings of the 15th ACM International Conference on Bioinformatics …, 2024 | | 2024 |
| AAB-seq: An antigen-specific and affinity-readable high-throughput BCR sequencing method M Hu, Q Lian, X Cui, X Dong, H Xin, W Shi bioRxiv, 2024.08. 13.607736, 2024 | | 2024 |
| Balancing Information Preservation and Computational Efficiency: L2 Normalization and Geodesic Distance in Manifold Learning Z Rong, J Cai, J Qiu, P Xu, L Garmire, Q Lian, H Xin | | |