| PredictSNP2: a unified platform for accurately evaluating SNP effects by exploiting the different characteristics of variants in distinct genomic regions J Bendl, M Musil, J Štourač, J Zendulka, J Damborský, J Brezovský PLoS computational biology 12 (5), e1004962, 2016 | 203 | 2016 |
| FireProt: web server for automated design of thermostable proteins M Musil, J Stourac, J Bendl, J Brezovsky, Z Prokop, J Zendulka, ... Nucleic acids research 45 (W1), W393-W399, 2017 | 182 | 2017 |
| Computational design of stable and soluble biocatalysts M Musil, H Konegger, J Hon, D Bednar, J Damborsky Acs Catalysis 9 (2), 1033-1054, 2018 | 145 | 2018 |
| FireProtDB: database of manually curated protein stability data J Stourac, J Dubrava, M Musil, J Horackova, J Damborsky, S Mazurenko, ... Nucleic acids research 49 (D1), D319-D324, 2021 | 114 | 2021 |
| HotSpot Wizard 2.0: automated design of site-specific mutations and smart libraries in protein engineering J Bendl, J Stourac, E Sebestova, O Vavra, M Musil, J Brezovsky, ... Nucleic acids research 44 (W1), W479-W487, 2016 | 112 | 2016 |
| Computational design of enzymes for biotechnological applications J Planas-Iglesias, SM Marques, GP Pinto, M Musil, J Stourac, ... Biotechnology Advances 47, 107696, 2021 | 89 | 2021 |
| FireProtASR: A Web Server for Fully Automated Ancestral Sequence Reconstruction M Musil, RT Khan, A Beier, J Stourac, H Konegger, J Damborsky, ... Briefings in bioinformatics 22 (4), bbaa337, 2021 | 71 | 2021 |
| Evolutionary analysis as a powerful complement to energy calculations for protein stabilization K Beerens, S Mazurenko, A Kunka, SM Marques, N Hansen, M Musil, ... ACS Catalysis 8 (10), 9420-9428, 2018 | 29 | 2018 |
| FireProt 2.0: web-based platform for the fully automated design of thermostable proteins M Musil, A Jezik, J Horackova, S Borko, P Kabourek, J Damborsky, ... Briefings in Bioinformatics 25 (1), bbad425, 2024 | 25 | 2024 |
| Fully Automated Ancestral Sequence Reconstruction using FireProtASR RT Khan, M Musil, J Stourac, J Damborsky, D Bednar Current Protocols 1 (2), e30, 2021 | 18 | 2021 |
| SoluProtMutDB: A manually curated database of protein solubility changes upon mutations J Velecký, M Hamsikova, J Stourac, M Musil, J Damborsky, D Bednar, ... Computational and Structural Biotechnology Journal 20, 6339-6347, 2022 | 15 | 2022 |
| Deep insights into the specific evolution of fungal hybrid B heme peroxidases M Zámocký, M Musil, M Danchenko, P Ferianc, K Chovanová, P Baráth, ... Biology 11 (3), 459, 2022 | 5 | 2022 |
| Comparison of Fungal Thermophilic and Mesophilic Catalase–Peroxidases for Their Antioxidative Properties A Poljovka, M Musil, D Bednář, K Chovanová, V Bauerová-Hlinková, ... Antioxidants 12 (7), 1382, 2023 | 2 | 2023 |
| Fully automated virtual screening pipeline of FDA-approved drugs using Caver Web M Musil, A Jezik, M Jankujova, J Stourac, J Galgonek, SM Eyrilmez, ... Computational and Structural Biotechnology Journal 20, 6512-6518, 2022 | 2 | 2022 |
| FireProt ASR: Automated design of ancestral proteins Z Prokop, M Musil, R Tariq Khan, A Beier, J Stourac, J Damborsky, ... | 1 | 2022 |
| RAPHYD: Predictor of the Effect of Amino Acid Substitutions on Protein Function M Musil Studentská konference Excel@ FIT, FIT VUT Brno, 2016 | 1 | 2016 |
| BenchStab J Velecký, M Berezný, M Musil, J Damborsky, D Bednar, S Mazurenko Bioinformatics 40 (9), 2024 | | 2024 |
| BenchStab: a tool for automated querying of web-based stability predictors J Velecký, M Berezný, M Musil, J Damborsky, D Bednar, S Mazurenko Bioinformatics 40 (9), btae553, 2024 | | 2024 |
| Anticipating Protein Evolution with Successor Sequence Predictor RT Khan, P Kohout, M Musil, M Rosinska, J Damborsky, S Mazurenka, ... bioRxiv, 2024.06. 08.598054, 2024 | | 2024 |
| Caver Web 1.2 M Musil, A Ježík, M Hamšíková, J Dvorský, J Galgonek, D Bednář, ... | | 2022 |
