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Alexander Favorov
Alexander Favorov
research [email protected]; senior fellow [email protected]
Bestätigte E-Mail-Adresse bei sensi.org - Startseite
Titel
Zitiert von
Zitiert von
Jahr
A promoter-level mammalian expression atlas
Nature 507 (7493), 462-470, 2014
18052014
Assessing computational tools for the discovery of transcription factor binding sites
M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ...
Nature biotechnology 23 (1), 137-144, 2005
16232005
Inferring causal molecular networks: empirical assessment through a community-based effort
SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ...
Nature methods 13 (4), 310-318, 2016
2612016
Enter the matrix: factorization uncovers knowledge from omics
GL Stein-O’Brien, R Arora, AC Culhane, AV Favorov, LX Garmire, ...
Trends in Genetics 34 (10), 790-805, 2018
2472018
A Markov chain Monte Carlo technique for identification of combinations of allelic variants underlying complex diseases in humans
AV Favorov, TV Andreewski, MA Sudomoina, OO Favorova, G Parmigiani, ...
Genetics 171 (4), 2113-2121, 2005
2072005
Exploring massive, genome scale datasets with the GenometriCorr package
A Favorov, L Mularoni, LM Cope, Y Medvedeva, AA Mironov, VJ Makeev, ...
PLoS computational biology 8 (5), e1002529, 2012
2012012
Deep and wide digging for binding motifs in ChIP-Seq data
IV Kulakovskiy, VA Boeva, AV Favorov, VJ Makeev
Bioinformatics 26 (20), 2622-2623, 2010
1882010
A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length
AV Favorov, MS Gelfand, AV Gerasimova, DA Ravcheev, AA Mironov, ...
Bioinformatics 21 (10), 2240-2245, 2005
1642005
Functional annotation of human long noncoding RNAs via molecular phenotyping
JA Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ...
Genome research 30 (7), 1060-1072, 2020
1552020
A polygenic approach to the study of polygenic diseases
D Lvovs, OO Favorova, AV Favorov
Acta Naturae (англоязычная версия) 4 (3 (14)), 59-71, 2012
1522012
Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation
H Morikawa, N Ohkura, A Vandenbon, M Itoh, S Nagao-Sato, H Kawaji, ...
Proceedings of the National Academy of Sciences 111 (14), 5289-5294, 2014
1502014
Epigenetic regulation of gene expression in cancer: techniques, resources and analysis
LT Kagohara, GL Stein-O’Brien, D Kelley, E Flam, HC Wick, LV Danilova, ...
Briefings in functional genomics 17 (1), 49-63, 2018
1412018
A review of genome-wide association studies for multiple sclerosis: classical and hypothesis-driven approaches
VV Bashinskaya, OG Kulakova, AN Boyko, AV Favorov, OO Favorova
Human genetics 134, 1143-1162, 2015
1332015
Preserving biological heterogeneity with a permuted surrogate variable analysis for genomics batch correction
HS Parker, JT Leek, AV Favorov, M Considine, X Xia, S Chavan, ...
Bioinformatics 30 (19), 2757-2763, 2014
1222014
CoGAPS: an R/C++ package to identify patterns and biological process activity in transcriptomic data
EJ Fertig, J Ding, AV Favorov, G Parmigiani, MF Ochs
Bioinformatics 26 (21), 2792-2793, 2010
1032010
HPV E2, E4, E5 drive alternative carcinogenic pathways in HPV positive cancers
S Ren, DA Gaykalova, T Guo, AV Favorov, EJ Fertig, P Tamayo, ...
Oncogene 39 (40), 6327-6339, 2020
912020
Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers
M Ando, Y Saito, G Xu, NQ Bui, K Medetgul-Ernar, M Pu, K Fisch, S Ren, ...
Nature communications 10 (1), 2188, 2019
912019
Landscape of allele-specific transcription factor binding in the human genome
S Abramov, A Boytsov, D Bykova, DD Penzar, I Yevshin, SK Kolmykov, ...
Nature communications 12 (1), 2751, 2021
872021
Transcriptional mechanisms of resistance to anti–PD-1 therapy
ML Ascierto, A Makohon-Moore, EJ Lipson, JM Taube, TL McMiller, ...
Clinical cancer research 23 (12), 3168-3180, 2017
832017
RNAKinetics: a web server that models secondary structure kinetics of an elongating RNA
LV Danilova, DD Pervouchine, AV Favorov, AA Mironov
Journal of bioinformatics and computational biology 4 (02), 589-596, 2006
792006
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