| The treatment-naive microbiome in new-onset Crohn’s disease D Gevers, S Kugathasan, LA Denson, Y Vázquez-Baeza, W Van Treuren, ... Cell host & microbe 15 (3), 382-392, 2014 | 3551 | 2014 |
| Ectopic colonization of oral bacteria in the intestine drives TH1 cell induction and inflammation K Atarashi, W Suda, C Luo, T Kawaguchi, I Motoo, S Narushima, ... Science 358 (6361), 359-365, 2017 | 841 | 2017 |
| Strengths and limitations of 16S rRNA gene amplicon sequencing in revealing temporal microbial community dynamics R Poretsky, LM Rodriguez-R, C Luo, D Tsementzi, KT Konstantinidis PloS one 9 (4), e93827, 2014 | 803 | 2014 |
| Indoleacrylic acid produced by commensal peptostreptococcus species suppresses inflammation M Wlodarska, C Luo, R Kolde, E d’Hennezel, JW Annand, CE Heim, ... Cell host & microbe 22 (1), 25-37. e6, 2017 | 769 | 2017 |
| Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample C Luo, D Tsementzi, N Kyrpides, T Read, KT Konstantinidis PLoS ONE 7 (2), e30087, 2012 | 674 | 2012 |
| MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences C Luo, LM Rodriguez-r, KT Konstantinidis Nucleic acids research 42 (8), e73-e73, 2014 | 518 | 2014 |
| Gut microbiome function predicts response to anti-integrin biologic therapy in inflammatory bowel diseases AN Ananthakrishnan, C Luo, V Yajnik, H Khalili, JJ Garber, BW Stevens, ... Cell host & microbe 21 (5), 603-610. e3, 2017 | 420 | 2017 |
| Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species C Luo, ST Walk, DM Gordon, M Feldgarden, JM Tiedje, KT Konstantinidis Proceedings of the National Academy of Sciences 108 (17), 7200-7205, 2011 | 389 | 2011 |
| Tundra soil carbon is vulnerable to rapid microbial decomposition under climate warming K Xue, M M. Yuan, Z J. Shi, Y Qin, YE Deng, L Cheng, L Wu, Z He, ... Nature Climate Change 6 (6), 595-600, 2016 | 350 | 2016 |
| ConStrains identifies microbial strains in metagenomic datasets C Luo, R Knight, H Siljander, M Knip, RJ Xavier, D Gevers Nature biotechnology 33 (10), 1045-1052, 2015 | 299 | 2015 |
| Metagenomic insights into the evolution, function, and complexity of the planktonic microbial community of Lake Lanier, a temperate freshwater ecosystem S Oh, A Caro-Quintero, D Tsementzi, N DeLeon-Rodriguez, C Luo, ... Applied and environmental microbiology 77 (17), 6000-6011, 2011 | 186 | 2011 |
| Soil microbial community responses to a decade of warming as revealed by comparative metagenomics C Luo, LM Rodriguez-R, ER Johnston, L Wu, L Cheng, K Xue, Q Tu, ... Applied and environmental microbiology 80 (5), 1777-1786, 2014 | 172 | 2014 |
| Individual genome assembly from complex community short-read metagenomic datasets C Luo, D Tsementzi, NC Kyrpides, KT Konstantinidis The ISME journal 6 (4), 898-901, 2012 | 149 | 2012 |
| Paneth cell defects in Crohn’s disease patients promote dysbiosis TC Liu, B Gurram, MT Baldridge, R Head, V Lam, C Luo, Y Cao, ... JCI insight 1 (8), 2016 | 140 | 2016 |
| Biofilms on hospital shower hoses: characterization and implications for nosocomial infections MJ Soto-Giron, LM Rodriguez-R, C Luo, M Elk, H Ryu, J Hoelle, ... Applied and environmental microbiology 82 (9), 2872-2883, 2016 | 92 | 2016 |
| Metagenomics reveals pervasive bacterial populations and reduced community diversity across the Alaska tundra ecosystem ER Johnston, LM Rodriguez-R, C Luo, MM Yuan, L Wu, Z He, ... Frontiers in microbiology 7, 579, 2016 | 89 | 2016 |
| Antigen discovery and specification of immunodominance hierarchies for MHCII-restricted epitopes DB Graham, C Luo, DJ O’Connell, A Lefkovith, EM Brown, M Yassour, ... Nature medicine 24 (11), 1762-1772, 2018 | 83 | 2018 |
| Metagenomics of two severe foodborne outbreaks provides diagnostic signatures and signs of coinfection not attainable by traditional methods AD Huang, C Luo, A Pena-Gonzalez, MR Weigand, CL Tarr, ... Applied and Environmental Microbiology 83 (3), e02577-16, 2017 | 73 | 2017 |
| Genome reannotation of Escherichia coli CFT073 with new insights into virulence C Luo, GQ Hu, H Zhu BMC genomics 10, 1-10, 2009 | 71 | 2009 |
| Iterative subtractive binning of freshwater chronoseries metagenomes identifies over 400 novel species and their ecologic preferences LM Rodriguez‐R, D Tsementzi, C Luo, KT Konstantinidis Environmental Microbiology 22 (8), 3394-3412, 2020 | 61 | 2020 |