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Ulas Karaoz
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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ...
nature 447 (7146), 799-816, 2007
61302007
Induction of intestinal Th17 cells by segmented filamentous bacteria
II Ivanov, K Atarashi, N Manel, EL Brodie, T Shima, U Karaoz, D Wei, ...
Cell 139 (3), 485-498, 2009
51632009
The ENCODE (ENCyclopedia Of DNA Elements) Project
EP Consortium
Science 306 (5696), 636-640, 2004
2459*2004
Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly
K Zhalnina, KB Louie, Z Hao, N Mansoori, UN Da Rocha, S Shi, H Cho, ...
Nature microbiology 3 (4), 470-480, 2018
16562018
Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system
K Anantharaman, CT Brown, LA Hug, I Sharon, CJ Castelle, AJ Probst, ...
Nature communications 7 (1), 13219, 2016
10712016
Differential growth responses of soil bacterial taxa to carbon substrates of varying chemical recalcitrance
KC Goldfarb, U Karaoz, CA Hanson, CA Santee, MA Bradford, ...
Frontiers in microbiology 2, 94, 2011
6352011
Use of 16S rRNA gene for identification of a broad range of clinically relevant bacterial pathogens
R Srinivasan, U Karaoz, M Volegova, J MacKichan, M Kato-Maeda, ...
PloS one 10 (2), e0117617, 2015
5602015
The landscape of histone modifications across 1% of the human genome in five human cell lines
CM Koch, RM Andrews, P Flicek, SC Dillon, U Karaöz, GK Clelland, ...
Genome research 17 (6), 691-707, 2007
5592007
Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients
MJ Cox, M Allgaier, B Taylor, MS Baek, YJ Huang, RA Daly, U Karaoz, ...
PloS one 5 (6), e11044, 2010
5182010
Gut microbiota mediate caffeine detoxification in the primary insect pest of coffee
JA Ceja-Navarro, FE Vega, U Karaoz, Z Hao, S Jenkins, HC Lim, ...
Nature communications 6 (1), 7618, 2015
4822015
Whole-genome annotation by using evidence integration in functional-linkage networks
U Karaoz, TM Murali, S Letovsky, Y Zheng, C Ding, CR Cantor, S Kasif
Proceedings of the National Academy of Sciences 101 (9), 2888-2893, 2004
4202004
Structure of the human gastric bacterial community in relation to Helicobacter pylori status
A Maldonado-Contreras, KC Goldfarb, F Godoy-Vitorino, U Karaoz, ...
The ISME journal 5 (4), 574-579, 2011
3522011
METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks
Z Zhou, PQ Tran, AM Breister, Y Liu, K Kieft, ES Cowley, U Karaoz, ...
Microbiome 10 (1), 33, 2022
3062022
Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows
F Godoy-Vitorino, KC Goldfarb, U Karaoz, S Leal, MA Garcia-Amado, ...
The ISME journal 6 (3), 531-541, 2012
2272012
Exometabolite niche partitioning among sympatric soil bacteria
R Baran, EL Brodie, J Mayberry-Lewis, E Hummel, UN Da Rocha, ...
Nature communications 6 (1), 8289, 2015
2122015
Bacteria increase arid-land soil surface temperature through the production of sunscreens
E Couradeau, U Karaoz, HC Lim, U Nunes da Rocha, T Northen, E Brodie, ...
Nature communications 7 (1), 10373, 2016
2022016
Niche differentiation is spatially and temporally regulated in the rhizosphere
EE Nuccio, E Starr, U Karaoz, EL Brodie, J Zhou, SG Tringe, ...
The ISME journal 14 (4), 999-1014, 2020
1952020
Linking soil biology and chemistry in biological soil crust using isolate exometabolomics
TL Swenson, U Karaoz, JM Swenson, BP Bowen, TR Northen
Nature communications 9 (1), 19, 2018
1632018
Human papillomavirus community in healthy persons, defined by metagenomics analysis of human microbiome project shotgun sequencing data sets
Y Ma, R Madupu, U Karaoz, CW Nossa, L Yang, S Yooseph, ...
Journal of virology 88 (9), 4786-4797, 2014
1592014
Metatranscriptomic evidence of pervasive and diverse chemolithoautotrophy relevant to C, S, N and Fe cycling in a shallow alluvial aquifer
TNM Jewell, U Karaoz, EL Brodie, KH Williams, HR Beller
The ISME Journal 10 (9), 2106-2117, 2016
1142016
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