| Efficient architecture-aware acceleration of BWA-MEM for multicore systems M Vasimuddin, S Misra, H Li, S Aluru 2019 IEEE international parallel and distributed processing symposium (IPDPS …, 2019 | 1758 | 2019 |
| Distgnn: Scalable distributed training for large-scale graph neural networks V Md, S Misra, G Ma, R Mohanty, E Georganas, A Heinecke, D Kalamkar, ... Proceedings of the International Conference for High Performance Computing …, 2021 | 139 | 2021 |
| Accelerating minimap2 for long-read sequencing applications on modern CPUs S Kalikar, C Jain, M Vasimuddin, S Misra Nature Computational Science 2 (2), 78-83, 2022 | 61* | 2022 |
| Tensor processing primitives: A programming abstraction for efficiency and portability in deep learning workloads E Georganas, D Kalamkar, S Avancha, M Adelman, C Anderson, A Breuer, ... Proceedings of the International Conference for High Performance Computing …, 2021 | 22 | 2021 |
| Genomicsbench: A benchmark suite for genomics A Subramaniyan, Y Gu, T Dunn, S Paul, M Vasimuddin, S Misra, ... 2021 IEEE International Symposium on Performance Analysis of Systems and …, 2021 | 21 | 2021 |
| Parallel bayesian network structure learning for genome-scale gene networks S Misra, M Vasimuddin, K Pamnany, SP Chockalingam, Y Dong, M Xie, ... SC'14: Proceedings of the International Conference for High Performance …, 2014 | 18 | 2014 |
| LISA: towards learned DNA sequence search D Ho, J Ding, S Misra, N Tatbul, V Nathan, V Md, T Kraska arXiv preprint arXiv:1910.04728, 2019 | 16 | 2019 |
| Performance extraction and suitability analysis of multi-and many-core architectures for next generation sequencing secondary analysis S Misra, TC Pan, K Mahadik, G Powley, PN Vaidya, M Vasimuddin, ... Proceedings of the 27th International Conference on Parallel Architectures …, 2018 | 14 | 2018 |
| GenDP: A Framework of Dynamic Programming Acceleration for Genome Sequencing Analysis Y Gu, A Subramaniyan, T Dunn, A Khadem, KY Chen, S Paul, ... Proceedings of the 50th Annual International Symposium on Computer …, 2023 | 10 | 2023 |
| Identification of significant computational building blocks through comprehensive investigation of NGS secondary analysis methods M Vasimuddin, S Misra, S Aluru Preprint] bioRXiv, April, 2018 | 10 | 2018 |
| A parallel algorithm for Bayesian network inference using arithmetic circuits M Vasimuddin, SP Chockalingam, S Aluru 2018 IEEE International Parallel and Distributed Processing Symposium (IPDPS …, 2018 | 9 | 2018 |
| Parallel exact dynamic bayesian network structure learning with application to gene networks M Vasimuddin, S Aluru 2017 IEEE 24th International Conference on High Performance Computing (HiPC …, 2017 | 7 | 2017 |
| Lisa: learned indexes for sequence analysis D Ho, S Kalikar, S Misra, J Ding, V Md, N Tatbul, H Li, T Kraska bioRxiv, 2020-2012, 2021 | 6* | 2021 |
| Deep graph library optimizations for intel (r) x86 architecture S Avancha, V Md, S Misra, R Mohanty arXiv preprint arXiv:2007.06354, 2020 | 5 | 2020 |
| Dtree: Dynamic task scheduling at petascale K Pamnany, S Misra, V Md, X Liu, E Chow, S Aluru High Performance Computing: 30th International Conference, ISC High …, 2015 | 5 | 2015 |
| Tensor Processing Primitives: A Programming Abstraction for Efficiency and Portability in Deep Learning and HPC Workloads E Georganas, D Kalamkar, S Avancha, M Adelman, D Aggarwal, ... Frontiers in Applied Mathematics and Statistics 8, 826269, 2022 | 2 | 2022 |
| Lisa: Learned indexes for DNA sequence analysis D Ho, S Kalikar, S Misra, J Ding, V Md, N Tatbul, H Li, T Kraska bioRxiv, 2020 | 2 | 2020 |
| DistGNN-MB: Distributed large-scale graph neural network training on x86 via minibatch sampling M Vasimuddin, R Mohanty, S Misra, S Avancha arXiv preprint arXiv:2211.06385, 2022 | 1 | 2022 |
| Identification of significant computational building blocks through comprehensive deep dive of ngs secondary analysis methods M Vasimuddin, S Misra, S Aluru bioRxiv, 301903, 2018 | 1 | 2018 |
| Accelerating whole-genome alignment in the age of complete genome assemblies G Chandra, M Vasimuddin, S Misra, C Jain bioRxiv, 2024.11. 25.625328, 2024 | | 2024 |