| ARTEMIS: An intrusion detection system for MQTT attacks in Internet of Things E Ciklabakkal, A Donmez, M Erdemir, E Suren, MK Yilmaz, P Angin 2019 38th Symposium on Reliable Distributed Systems (SRDS), 369-3692, 2019 | 62 | 2019 |
| iBioProVis: interactive visualization and analysis of compound bioactivity space A Donmez, AS Rifaioglu, A Acar, T Doğan, R Cetin-Atalay, V Atalay Bioinformatics 36 (14), 4227-4230, 2020 | 12 | 2020 |
| stRainy: assembly-based metagenomic strain phasing using long reads E Kazantseva, A Donmez, M Pop, M Kolmogorov bioRxiv, 2023 | 7 | 2023 |
| Severus: accurate detection and characterization of somatic structural variation in tumor genomes using long reads A Keskus, A Bryant, T Ahmad, B Yoo, S Aganezov, A Goretsky, A Donmez, ... medRxiv, 2024 | 6 | 2024 |
| Strainy: phasing and assembly of strain haplotypes from long-read metagenome sequencing E Kazantseva, A Donmez, M Frolova, M Pop, M Kolmogorov Nature Methods 21 (11), 2034-2043, 2024 | 4 | 2024 |
| Data Centric Molecular Analysis and Evaluation of Hepatocellular Carcinoma Therapeutics Using Machine Intelligence-Based Tools R Cetin-Atalay, DC Kahraman, E Nalbat, AS Rifaioglu, A Atakan, ... Journal of Gastrointestinal Cancer 52 (4), 1266-1276, 2021 | 1 | 2021 |
| Benchmarking long-and short-read somatic structural variation callers using a multi-technology panel of six tumor/normal cell lines A Keskus, A Bryant, T Ahmad, A Donmez, I Rodriguez, N Rossi, Y Xie, ... Cancer Research 84 (6_Supplement), 2338-2338, 2024 | | 2024 |
| Long-read, assembly-based characterization of rearranged cancer karyotypes A Keskus, T Ahmad, A Donmez, Y Xie, I Rodriguez, R Milano, N Rossi, ... Cancer Research 83 (7_Supplement), 4289-4289, 2023 | | 2023 |
