| Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data LC Hughes, G Ortí, Y Huang, Y Sun, CC Baldwin, AW Thompson, D Arcila, ... Proceedings of the National Academy of Sciences, 201719358, 2018 | 566 | 2018 |
| A time-calibrated, multi-locus phylogeny of piranhas and pacus (Characiformes: Serrasalmidae) and a comparison of species tree methods AW Thompson, R Betancur-R, H López-Fernández, G Ortí Molecular Phylogenetics and Evolution 81, 242-257, 2014 | 81 | 2014 |
| Deep evolutionary origin of limb and fin regeneration S Darnet, AC Dragalzew, DB Amaral, JF Sousa, AW Thompson, AN Cass, ... Proceedings of the National Academy of Sciences 116 (30), 15106-15115, 2019 | 68 | 2019 |
| The bowfin genome illuminates the developmental evolution of ray-finned fishes AW Thompson, MB Hawkins, E Parey, DJ Wcisel, T Ota, K Kawasaki, ... Nature Genetics 53 (9), 1373-1384, 2021 | 67 | 2021 |
| Genome structures resolve the early diversification of teleost fishes E Parey, A Louis, J Montfort, O Bouchez, C Roques, C Iampietro, J Lluch, ... Science 379 (6632), 572-575, 2023 | 46 | 2023 |
| Academic ecosystems must evolve to support a sustainable postdoc workforce M Ålund, N Emery, BJM Jarrett, KJ MacLeod, HF McCreery, ... Nature Ecology & Evolution 4 (6), 777-781, 2020 | 41 | 2020 |
| Annual killifish transcriptomics and candidate genes for metazoan diapause AW Thompson, G Ortí Molecular biology and evolution 33 (9), 2391-2395, 2016 | 27 | 2016 |
| Microanatomical diversification of the zona pellucida in aplochelioid killifishes AW Thompson, AI Furness, C Stone, CM Rade, G Ortí Journal of Fish Biology 91 (1), 126-143, 2017 | 26 | 2017 |
| Transcriptomic analysis of changes in gene expression of immune proteins of gill tissue in response to low environmental temperature in fathead minnows (Pimephales promelas) RK Wentworth, S. A., Thede, K., Aravindabose, V., Monroe, I., Thompson, A. W ... Comparative Biochemistry and Physiology Part D: Genomics and Proteomics 25 …, 2018 | 23 | 2018 |
| Gene expression during delayed hatching in fish-out-of-water AW Thompson, A Hayes, JE Podrabsky, G Ortí Ecological Genetics and Genomics 3, 52-59, 2017 | 18 | 2017 |
| Holosteans contextualize the role of the teleost genome duplication in promoting the rise of evolutionary novelties in the ray-finned fish innate immune system A Dornburg, DJ Wcisel, K Zapfe, E Ferraro, L Roupe-Abrams, ... Immunogenetics 73 (6), 479-497, 2021 | 13 | 2021 |
| Convergent losses of SCPP genes and ganoid scales among non-teleost actinopterygians M Mikami, T Ineno, AW Thompson, I Braasch, M Ishiyama, K Kawasaki Gene 811, 146091, 2022 | 11 | 2022 |
| Genome of the Rio Pearlfish (Nematolebias whitei), a bi-annual killifish model for Eco-Evo-Devo in extreme environments AW Thompson, H Wojtas, M Davoll, I Braasch G3 Genes|Genomes|Genetics, 2022 | 9 | 2022 |
| Deterministic shifts in molecular evolution correlate with convergence to annualism in killifishes AW Thompson, AC Black, Y Huang, Q Shi, AI Furness, I Braasch, ... BioRxiv, 2021.08. 09.455723, 2021 | 5 | 2021 |
| Suppressors of cGAS‐STING are downregulated during fin‐limb regeneration and aging in aquatic vertebrates S Mathavarajah, AW Thompson, MR Stoyek, TA Quinn, S Roy, I Braasch, ... Journal of Experimental Zoology Part B: Molecular and Developmental …, 2024 | 1 | 2024 |
| An independent origin of an annual life cycle in a North American killifish species O Domínguez-Castanedo, AW Thompson, RW Meredith, AI Furness Biological Journal of the Linnean Society, blae029, 2024 | 1 | 2024 |
| River drainage rearrangements and the phylogeographic pattern of the annual fish Austrolebias arachan (Cyprinodontiformes, Rivulidae) M Loureiro, S Stareczek, A D'anatro, AW Thompson, G Ortí Zoologica Scripta 53 (2), 142-156, 2024 | 1 | 2024 |
| Cellular mechanisms of frontal bone development in spotted gar (Lepisosteus oculatus) A Enny, A Shanabag, AW Thompson, B Racicot, I Braasch, T Nakamura Developmental Dynamics 250 (11), 1668-1682, 2021 | 1 | 2021 |
| Transcriptomic Data Support a Robust Phylogeny of Aplocheiloid Killifishes (Cyprinodontiformes) and Reveal Genomic Changes Associated with the Repeated Evolution of Annualism AW Thompson, AC Black, Y Huang, Q Shi, AI Furness, I Braasch, ... Available at SSRN 4612780, 0 | 1 | |
| Transcriptomic data support phylogenetic congruence and reveal genomic changes associated with the repeated evolution of annualism in aplocheiloid killifishes (Cyprinodontiformes) AW Thompson, AC Black, Y Huang, Q Shi, AI Furness, I Braasch, ... Molecular phylogenetics and evolution 201, 108209, 2024 | | 2024 |
