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Travis Wheeler
Travis Wheeler
Associate Professor, Dept Pharmacy Practice & Science, U. Arizona
Bestätigte E-Mail-Adresse bei traviswheeler.com - Startseite
Titel
Zitiert von
Zitiert von
Jahr
HMMER web server: 2015 update
RD Finn, J Clements, W Arndt, BL Miller, TJ Wheeler, F Schreiber, ...
Nucleic acids research 43 (W1), W30-W38, 2015
9452015
nhmmer: DNA homology search with profile HMMs
TJ Wheeler, SR Eddy
Bioinformatics 29 (19), 2487-2489, 2013
8212013
The Dfam database of repetitive DNA families
R Hubley, RD Finn, J Clements, SR Eddy, TA Jones, W Bao, AFA Smit, ...
Nucleic acids research 44 (D1), D81-D89, 2016
6922016
The Dfam community resource of transposable element families, sequence models, and genome annotations
J Storer, R Hubley, J Rosen, TJ Wheeler, AF Smit
Mobile DNA 12, 1-14, 2021
4662021
Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models
TJ Wheeler, J Clements, RD Finn
BMC Bioinformatics 15 (1), 7, 2014
3852014
Complete genomic and epigenetic maps of human centromeres
N Altemose, GA Logsdon, AV Bzikadze, P Sidhwani, SA Langley, ...
Science 376 (6588), eabl4178, 2022
3802022
Multiple alignment by aligning alignments
TJ Wheeler, JD Kececioglu
Bioinformatics 23 (13), i559-i568, 2007
3092007
Dfam: a database of repetitive DNA based on profile hidden Markov models
TJ Wheeler, J Clements, SR Eddy, R Hubley, TA Jones, J Jurka, AFA Smit, ...
Nucleic acids research 41 (D1), D70-D82, 2012
3082012
15 years of PhosphoSitePlus®: integrating post-translationally modified sites, disease variants and isoforms
PV Hornbeck, JM Kornhauser, V Latham, B Murray, V Nandhikonda, ...
Nucleic acids research 47 (D1), D433-D441, 2019
2812019
From telomere to telomere: The transcriptional and epigenetic state of human repeat elements
SJ Hoyt, JM Storer, GA Hartley, PGS Grady, A Gershman, LG de Lima, ...
Science 376 (6588), eabk3112, 2022
2632022
Large-scale neighbor-joining with NINJA
TJ Wheeler
International Workshop on Algorithms in Bioinformatics, 375-389, 2009
1202009
A call for benchmarking transposable element annotation methods
DR Hoen, G Hickey, G Bourque, J Casacuberta, R Cordaux, C Feschotte, ...
Mobile DNA 6 (1), 1-9, 2015
1022015
Pf Bacteriophage and Their Impact on Pseudomonas Virulence, Mammalian Immunity, and Chronic Infections
PR Secor, EB Burgener, M Kinnersley, LK Jennings, V Roman-Cruz, ...
Frontiers in Immunology 11, 2020
1012020
Complete nucleomorph genome sequence of the nonphotosynthetic alga Cryptomonas paramecium reveals a core nucleomorph gene set
G Tanifuji, NT Onodera, TJ Wheeler, M Dlutek, N Donaher, JM Archibald
Genome biology and evolution 3, 44-54, 2011
772011
Integration of protein phosphorylation, acetylation, and methylation data sets to outline lung cancer signaling networks
M Grimes, B Hall, L Foltz, T Levy, K Rikova, J Gaiser, W Cook, E Smirnova, ...
Science signaling 11 (531), eaaq1087, 2018
582018
ULTRA: A Model Based Tool to Detect Tandem Repeats
D Olson, T Wheeler
ACM-BCB ’18, 2018
362018
Transposable element orientation bias in the Drosophila melanogaster genome
AD Cutter, JM Good, CT Pappas, MA Saunders, DM Starrett, TJ Wheeler
Journal of molecular evolution 61 (6), 733-741, 2005
272005
Estimating the Accuracy of Multiple Alignments and its Use in Parameter Advising
D DeBlasio, T Wheeler, J Kececioglu
Research in Computational Molecular Biology, 45-59, 2012
252012
Adaptive protein evolution and regulatory divergence in Drosophila
JM Good, CA Hayden, TJ Wheeler
Molecular biology and evolution 23 (6), 1101-1103, 2006
242006
TE Hub: A community-oriented space for sharing and connecting tools, data, resources, and methods for transposable element annotation
TE Hub Consortium, TA Elliott, T Heitkam, R Hubley, H Quesneville, ...
Mobile DNA 12 (1), 16, 2021
222021
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