Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection BF Keele, EE Giorgi, JF Salazar-Gonzalez, JM Decker, KT Pham, ... Proceedings of the National Academy of Sciences 105 (21), 7552-7557, 2008 | 2376 | 2008 |
A flexible R package for nonnegative matrix factorization R Gaujoux, C Seoighe BMC bioinformatics 11, 1-9, 2010 | 1431 | 2010 |
Quantitating the multiplicity of infection with human immunodeficiency virus type 1 subtype C reveals a non-poisson distribution of transmitted variants MR Abrahams, JA Anderson, EE Giorgi, C Seoighe, K Mlisana, LH Ping, ... Journal of virology 83 (8), 3556-3567, 2009 | 507 | 2009 |
Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome C Seoighe, C Gehring Trends in Genetics 20 (10), 461-464, 2004 | 290 | 2004 |
Genome-wide analysis of the structure of the South African Coloured Population in the Western Cape E De Wit, W Delport, CE Rugamika, A Meintjes, M Möller, PD Van Helden, ... Human genetics 128, 145-153, 2010 | 279 | 2010 |
Robust inference of positive selection from recombining coding sequences K Scheffler, DP Martin, C Seoighe Bioinformatics 22 (20), 2493-2499, 2006 | 235 | 2006 |
Yeast genome evolution in the post-genome era C Seoighe, KH Wolfe Current opinion in microbiology 2 (5), 548-554, 1999 | 227 | 1999 |
HIV evolution in early infection: selection pressures, patterns of insertion and deletion, and the impact of APOBEC N Wood, T Bhattacharya, BF Keele, E Giorgi, M Liu, B Gaschen, ... PLoS pathogens 5 (5), e1000414, 2009 | 221 | 2009 |
CellMix: a comprehensive toolbox for gene expression deconvolution R Gaujoux, C Seoighe Bioinformatics 29 (17), 2211-2212, 2013 | 220 | 2013 |
Immune and genetic correlates of vaccine protection against mucosal infection by SIV in monkeys NL Letvin, SS Rao, DC Montefiori, MS Seaman, Y Sun, SY Lim, WW Yeh, ... Science translational medicine 3 (81), 81ra36-81ra36, 2011 | 213 | 2011 |
Transmission of HIV-1 CTL escape variants provides HLA-mismatched recipients with a survival advantage DR Chopera, Z Woodman, K Mlisana, M Mlotshwa, DP Martin, C Seoighe, ... PLoS pathogens 4 (3), e1000033, 2008 | 175 | 2008 |
RNA: DNA hybrids in the human genome have distinctive nucleotide characteristics, chromatin composition, and transcriptional relationships J Nadel, R Athanasiadou, C Lemetre, NA Wijetunga, P Ó Broin, H Sato, ... Epigenetics & chromatin 8, 1-19, 2015 | 171 | 2015 |
Prevalence of small inversions in yeast gene order evolution C Seoighe, N Federspiel, T Jones, N Hansen, V Bivolarovic, R Surzycki, ... Proceedings of the National Academy of Sciences 97 (26), 14433-14437, 2000 | 171 | 2000 |
Gene-set analysis is severely biased when applied to genome-wide methylation data P Geeleher, L Hartnett, LJ Egan, A Golden, RA Raja Ali, C Seoighe Bioinformatics 29 (15), 1851-1857, 2013 | 160 | 2013 |
Extent of genomic rearrangement after genome duplication in yeast C Seoighe, KH Wolfe Proceedings of the National Academy of Sciences 95 (8), 4447-4452, 1998 | 157 | 1998 |
Semi-supervised Nonnegative Matrix Factorization for gene expression deconvolution: a case study R Gaujoux, C Seoighe Infection, Genetics and Evolution 12 (5), 913-921, 2012 | 154 | 2012 |
Incidence of HIV-1 dual infection and its association with increased viral load set point in a cohort of HIV-1 subtype C-infected female sex workers J Grobler, CM Gray, C Rademeyer, C Seoighe, G Ramjee, SA Karim, ... The Journal of infectious diseases 190 (7), 1355-1359, 2004 | 147 | 2004 |
The shared genomic architecture of human nucleolar organizer regions I Floutsakou, S Agrawal, TT Nguyen, C Seoighe, ARD Ganley, B McStay Genome research 23 (12), 2003-2012, 2013 | 145 | 2013 |
Updated map of duplicated regions in the yeast genome C Seoighe, KH Wolfe Gene 238 (1), 253-261, 1999 | 143 | 1999 |
Evolution of gene order and chromosome number in Saccharomyces, Kluyveromyces and related fungi RS Keogh, C Seoighe, KH Wolfe Yeast 14 (5), 443-457, 1998 | 140 | 1998 |