| Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand JL Geoghegan, X Ren, M Storey, J Hadfield, L Jelley, S Jefferies, ... Nature communications 11 (1), 6351, 2020 | 149 | 2020 |
| Adaptive dating and fast proposals: Revisiting the phylogenetic relaxed clock model J Douglas, R Zhang, R Bouckaert PLoS computational biology 17 (2), e1008322, 2021 | 110 | 2021 |
| StarBeast3: adaptive parallelized Bayesian inference under the multispecies coalescent J Douglas, CL Jiménez-Silva, R Bouckaert Systematic Biology 71 (4), 901-916, 2022 | 56 | 2022 |
| Use of genomics to track coronavirus disease outbreaks, New Zealand JL Geoghegan, J Douglas, X Ren, M Storey, J Hadfield, OK Silander, ... Emerging Infectious Diseases 27 (5), 1317, 2021 | 45 | 2021 |
| Real-time genomics for tracking severe acute respiratory syndrome coronavirus 2 border incursions after virus elimination, New Zealand J Douglas, JL Geoghegan, J Hadfield, R Bouckaert, M Storey, X Ren, ... Emerging infectious diseases 27 (9), 2361, 2021 | 44 | 2021 |
| Phylodynamics reveals the role of human travel and contact tracing in controlling the first wave of COVID-19 in four island nations J Douglas, FK Mendes, R Bouckaert, D Xie, CL Jiménez-Silva, ... Virus evolution 7 (2), veab052, 2021 | 41 | 2021 |
| Characterisation of assembly and ubiquitylation by the RBCC motif of Trim5α JR Keown, JX Yang, J Douglas, DC Goldstone Scientific reports 6 (1), 26837, 2016 | 36 | 2016 |
| Evolutionary history of cotranscriptional editing in the paramyxoviral phosphoprotein gene J Douglas, AJ Drummond, RL Kingston Virus Evolution 7 (1), veab028, 2021 | 31 | 2021 |
| Genomic epidemiology of Delta SARS-CoV-2 during transition from elimination to suppression in Aotearoa New Zealand L Jelley, J Douglas, X Ren, D Winter, A McNeill, S Huang, N French, ... Nature Communications 13 (1), 4035, 2022 | 25 | 2022 |
| Improving performance by reformulating PDDL into a bagged representation P Riddle, J Douglas, M Barley, S Franco Proceedings of the 8th Workshop on Heuristic Search for Domain-independent …, 2016 | 25 | 2016 |
| Genomic epidemiology of SARS-CoV-2 variants during the first two years of the pandemic in Colombia C Jimenez-Silva, R Rivero, J Douglas, R Bouckaert, CJ Villabona-Arenas, ... Communications Medicine 3 (1), 97, 2023 | 22* | 2023 |
| Automated transformation of PDDL representations P Riddle, M Barley, S Franco, J Douglas Proceedings of the International Symposium on Combinatorial Search 6 (1 …, 2015 | 22 | 2015 |
| Tracing the international arrivals of SARS-CoV-2 Omicron variants after Aotearoa New Zealand reopened its border J Douglas, D Winter, A McNeill, S Carr, M Bunce, N French, J Hadfield, ... Nature Communications 13 (1), 6484, 2022 | 21 | 2022 |
| UglyTrees: a browser-based multispecies coalescent tree visualizer J Douglas Bioinformatics 37 (2), 268-269, 2021 | 19 | 2021 |
| Enzymic recognition of amino acids drove the evolution of primordial genetic codes J Douglas, R Bouckaert, CW Carter Jr, PR Wills Nucleic Acids Research 52 (2), 558-571, 2024 | 17 | 2024 |
| Quantitatively defining species boundaries with more efficiency and more biological realism J Douglas, R Bouckaert Communications Biology 5 (1), 755, 2022 | 15 | 2022 |
| Tertiary-interaction characters enable fast, model-based structural phylogenetics beyond the twilight zone C Puente-Lelievre, AJ Malik, J Douglas, D Ascher, M Baker, J Allison, ... bioRxiv, 2023.12. 12.571181, 2023 | 10 | 2023 |
| Domain acquisition by class I aminoacyl-tRNA synthetase urzymes coordinated the catalytic functions of HVGH and KMSKS motifs GQ Tang, JJH Elder, J Douglas, CW Carter Jr Nucleic Acids Research 51 (15), 8070-8084, 2023 | 9 | 2023 |
| Bayesian inference and comparison of stochastic transcription elongation models J Douglas, R Kingston, AJ Drummond PLoS computational biology 16 (2), e1006717, 2020 | 8 | 2020 |
| Analysis of bagged representations in PDDL P Riddle, M Barley, S Franco, J Douglas Heuristics and search for domain-independent planning, 2015 | 7 | 2015 |