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Asim Siddiqui
Asim Siddiqui
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The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)
GA Tuskan, S Difazio, S Jansson, J Bohlmann, I Grigoriev, U Hellsten, ...
science 313 (5793), 1596-1604, 2006
50962006
mRNA-Seq whole-transcriptome analysis of a single cell
F Tang, C Barbacioru, Y Wang, E Nordman, C Lee, N Xu, X Wang, ...
Nature methods 6 (5), 377-382, 2009
41332009
The genome sequence of the SARS-associated coronavirus
MA Marra, SJM Jones, CR Astell, RA Holt, A Brooks-Wilson, ...
Science 300 (5624), 1399-1404, 2003
30052003
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
University of Utah Weiss Robert B. 14 Dunn Diane M. 14, ...
Nature 428 (6982), 493-521, 2004
25942004
JPred: a consensus secondary structure prediction server.
JA Cuff, ME Clamp, AS Siddiqui, M Finlay, GJ Barton
Bioinformatics (Oxford, England) 14 (10), 892-893, 1998
13061998
Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis
TS Adams, JC Schupp, S Poli, EA Ayaub, N Neumark, F Ahangari, ...
Science advances 6 (28), eaba1983, 2020
10612020
The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse
MP McLeod, RL Warren, WWL Hsiao, N Araki, M Myhre, C Fernandes, ...
Proceedings of the National Academy of Sciences 103 (42), 15582-15587, 2006
8072006
Single-nucleotide polymorphism–based noninvasive prenatal screening in a high-risk and low-risk cohort
E Pergament, H Cuckle, B Zimmermann, M Banjevic, S Sigurjonsson, ...
Obstetrics & Gynecology 124 (2 PART 1), 210-218, 2014
4152014
Expanding the scope of noninvasive prenatal testing: detection of fetal microdeletion syndromes
RJ Wapner, JE Babiarz, B Levy, M Stosic, B Zimmermann, S Sigurjonsson, ...
American journal of obstetrics and gynecology 212 (3), 332. e1-332. e9, 2015
4022015
Oligonucleotide microarray analysis of genomic imbalance in children with mental retardation
JM Friedman, Á Baross, AD Delaney, A Ally, L Arbour, J Asano, DK Bailey, ...
The American Journal of Human Genetics 79 (3), 500-513, 2006
3682006
Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach
MN Bainbridge, RL Warren, M Hirst, T Romanuik, T Zeng, A Go, ...
BMC genomics 7, 1-11, 2006
2962006
Rapid, deep and precise profiling of the plasma proteome with multi-nanoparticle protein corona
JE Blume, WC Manning, G Troiano, D Hornburg, M Figa, L Hesterberg, ...
Nature communications 11 (1), 3662, 2020
2862020
Genome and transcriptome sequencing in prospective metastatic triple-negative breast cancer uncovers therapeutic vulnerabilities
DW Craig, JA O'Shaughnessy, JA Kiefer, J Aldrich, S Sinari, TM Moses, ...
Molecular cancer therapeutics 12 (1), 104-116, 2013
2852013
Continuous and discontinuous domains: an algorithm for the automatic generation of reliable protein domain definitions
AS Siddiqui, GJ Barton
Protein Science 4 (5), 872-884, 1995
2471995
Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts
CA D’souza, JW Kronstad, G Taylor, R Warren, M Yuen, G Hu, WH Jung, ...
MBio 2 (1), 10.1128/mbio. 00342-10, 2011
2262011
Genomics of hybrid poplar (Populus trichocarpa× deltoides) interacting with forest tent caterpillars (Malacosoma disstria): normalized and full‐length cDNA …
S Ralph, C Oddy, D Cooper, H Yueh, S Jancsik, N Kolosova, RN Philippe, ...
Molecular Ecology 15 (5), 1275-1297, 2006
2172006
Tumor transcriptome sequencing reveals allelic expression imbalances associated with copy number alterations
BB Tuch, RR Laborde, X Xu, J Gu, CB Chung, CK Monighetti, SJ Stanley, ...
PloS one 5 (2), e9317, 2010
1732010
A mouse atlas of gene expression: large-scale digital gene-expression profiles from precisely defined developing C57BL/6J mouse tissues and cells
AS Siddiqui, J Khattra, AD Delaney, Y Zhao, C Astell, J Asano, ...
Proceedings of the National Academy of Sciences 102 (51), 18485-18490, 2005
1452005
cisRED: a database system for genome-scale computational discovery of regulatory elements
G Robertson, M Bilenky, K Lin, A He, W Yuen, M Dagpinar, R Varhol, ...
Nucleic acids research 34 (suppl_1), D68-D73, 2006
1362006
Generation, annotation, analysis and database integration of 16,500 white spruce EST clusters
N Pavy, C Paule, L Parsons, JA Crow, MJ Morency, J Cooke, JE Johnson, ...
BMC genomics 6, 1-19, 2005
1342005
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