| STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets D Szklarczyk, AL Gable, D Lyon, A Junge, S Wyder, J Huerta-Cepas, ... Nucleic acids research 47 (D1), D607-D613, 2019 | 15993 | 2019 |
| The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets D Szklarczyk, AL Gable, KC Nastou, D Lyon, R Kirsch, S Pyysalo, ... Nucleic acids research 49 (D1), D605-D612, 2021 | 6661 | 2021 |
| Site-specific mapping of the human SUMO proteome reveals co-modification with phosphorylation IA Hendriks, D Lyon, C Young, LJ Jensen, ACO Vertegaal, ML Nielsen Nature structural & molecular biology 24 (3), 325-336, 2017 | 397 | 2017 |
| Proteome-wide analysis of arginine monomethylation reveals widespread occurrence in human cells SC Larsen, KB Sylvestersen, A Mund, D Lyon, M Mullari, MV Madsen, ... Science signaling 9 (443), rs9-rs9, 2016 | 334 | 2016 |
| Site-specific characterization of endogenous SUMOylation across species and organs IA Hendriks, D Lyon, D Su, NH Skotte, JA Daniel, LJ Jensen, ML Nielsen Nature communications 9 (1), 2456, 2018 | 197 | 2018 |
| Early Pleistocene enamel proteome from Dmanisi resolves Stephanorhinus phylogeny E Cappellini, F Welker, L Pandolfi, J Ramos-Madrigal, D Samodova, ... Nature 574 (7776), 103-107, 2019 | 187 | 2019 |
| Analysis of human acetylation stoichiometry defines mechanistic constraints on protein regulation BK Hansen, R Gupta, L Baldus, D Lyon, T Narita, M Lammers, ... Nature communications 10 (1), 1055, 2019 | 160 | 2019 |
| Systems-wide analysis of serine ADP-ribosylation reveals widespread occurrence and site-specific overlap with phosphorylation SC Larsen, IA Hendriks, D Lyon, LJ Jensen, ML Nielsen Cell reports 24 (9), 2493-2505. e4, 2018 | 157 | 2018 |
| Granger causality in integrated GC–MS and LC–MS metabolomics data reveals the interface of primary and secondary metabolism H Doerfler, D Lyon, T Nägele, X Sun, L Fragner, F Hadacek, V Egelhofer, ... Metabolomics 9, 564-574, 2013 | 124 | 2013 |
| Palaeoproteomic profiling of conservation layers on a 14th century Italian wall painting M Mackie, P Rüther, D Samodova, F Di Gianvincenzo, C Granzotto, ... Angewandte Chemie International Edition 57 (25), 7369-7374, 2018 | 114 | 2018 |
| Phytochemical composition of Potentilla anserina L. analyzed by an integrative GC-MS and LC-MS metabolomics platform A Mari, D Lyon, L Fragner, P Montoro, S Piacente, S Wienkoop, ... Metabolomics 9, 599-607, 2013 | 103 | 2013 |
| Accurate quantification of site-specific acetylation stoichiometry reveals the impact of sirtuin deacetylase CobB on the E. coli acetylome BT Weinert, S Satpathy, BK Hansen, D Lyon, LJ Jensen, C Choudhary Molecular & Cellular Proteomics 16 (5), 759-769, 2017 | 101 | 2017 |
| Quantitative metaproteomics of medieval dental calculus reveals individual oral health status RR Jersie-Christensen, LT Lanigan, D Lyon, M Mackie, D Belstrøm, ... Nature communications 9 (1), 4744, 2018 | 99 | 2018 |
| Comprehensive tissue-specific proteome analysis of drought stress responses in Pennisetum glaucum (L.) R. Br.(Pearl millet) A Ghatak, P Chaturvedi, M Nagler, V Roustan, D Lyon, G Bachmann, ... Journal of Proteomics 143, 122-135, 2016 | 96 | 2016 |
| Metaproteomics of saliva identifies human protein markers specific for individuals with periodontitis and dental caries compared to orally healthy controls D Belstrøm, RR Jersie-Christensen, D Lyon, C Damgaard, LJ Jensen, ... PeerJ 4, e2433, 2016 | 70 | 2016 |
| Comprehensive cell-specific protein analysis in early and late pollen development from diploid microsporocytes to pollen tube growth T Ischebeck, L Valledor, D Lyon, S Gingl, M Nagler, M Meijon, V Egelhofer, ... Molecular & Cellular Proteomics 13 (1), 295-310, 2014 | 65 | 2014 |
| Avoiding abundance bias in the functional annotation of posttranslationally modified proteins C Schölz, D Lyon, JC Refsgaard, LJ Jensen, C Choudhary, BT Weinert Nature methods 12 (11), 1003-1004, 2015 | 64 | 2015 |
| Specifying RNA-binding regions in proteins by peptide cross-linking and affinity purification M Mullari, D Lyon, LJ Jensen, ML Nielsen Journal of proteome research 16 (8), 2762-2772, 2017 | 56 | 2017 |
| Drought and recovery: independently regulated processes highlighting the importance of protein turnover dynamics and translational regulation in Medicago truncatula D Lyon, MA Castillejo, V Mehmeti-Tershani, C Staudinger, C Kleemaier, ... Molecular & Cellular Proteomics 15 (6), 1921-1937, 2016 | 55 | 2016 |
| mzGroupAnalyzer-predicting pathways and novel chemical structures from untargeted high-throughput metabolomics data H Doerfler, X Sun, L Wang, D Engelmeier, D Lyon, W Weckwerth PloS one 9 (5), e96188, 2014 | 48 | 2014 |