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Vsevolod Makeev
Vsevolod Makeev
Cancer Research UK, Manchester
Bestätigte E-Mail-Adresse bei manchester.ac.uk
Titel
Zitiert von
Zitiert von
Jahr
A promoter-level mammalian expression atlas
Nature 507 (7493), 462-470, 2014
18052014
Assessing computational tools for the discovery of transcription factor binding sites
M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ...
Nature biotechnology 23 (1), 137-144, 2005
16232005
HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis
IV Kulakovskiy, IE Vorontsov, IS Yevshin, RN Sharipov, AD Fedorova, ...
Nucleic acids research 46 (D1), D252-D259, 2018
8612018
An integrated expression atlas of miRNAs and their promoters in human and mouse
D De Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor, G Åström, ...
Nature biotechnology 35 (9), 872-878, 2017
6192017
HOCOMOCO: a comprehensive collection of human transcription factor binding sites models
IV Kulakovskiy, YA Medvedeva, U Schaefer, AS Kasianov, IE Vorontsov, ...
Nucleic acids research 41 (D1), D195-D202, 2013
2952013
HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models
IV Kulakovskiy, IE Vorontsov, IS Yevshin, AV Soboleva, AS Kasianov, ...
Nucleic acids research 44 (D1), D116-D125, 2016
2692016
GTRD: an integrated view of transcription regulation
S Kolmykov, I Yevshin, M Kulyashov, R Sharipov, Y Kondrakhin, ...
Nucleic acids research 49 (D1), D104-D111, 2021
2142021
Identification of proteins associated with murine cytomegalovirus virions
LM Kattenhorn, R Mills, M Wagner, A Lomsadze, V Makeev, ...
Journal of virology 78 (20), 11187-11197, 2004
2122004
Homotypic regulatory clusters in Drosophila
AP Lifanov, VJ Makeev, AG Nazina, DA Papatsenko
Genome research 13 (4), 579-588, 2003
2122003
Exploring massive, genome scale datasets with the GenometriCorr package
A Favorov, L Mularoni, LM Cope, Y Medvedeva, AA Mironov, VJ Makeev, ...
PLoS computational biology 8 (5), e1002529, 2012
2012012
Deep and wide digging for binding motifs in ChIP-Seq data
IV Kulakovskiy, VA Boeva, AV Favorov, VJ Makeev
Bioinformatics 26 (20), 2622-2623, 2010
1882010
De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum)
MD Logacheva, AS Kasianov, DV Vinogradov, TH Samigullin, ...
BMC genomics 12, 1-17, 2011
1672011
A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length
AV Favorov, MS Gelfand, AV Gerasimova, DA Ravcheev, AA Mironov, ...
Bioinformatics 21 (10), 2240-2245, 2005
1642005
Functional annotation of human long noncoding RNAs via molecular phenotyping
JA Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ...
Genome research 30 (7), 1060-1072, 2020
1552020
A novel model system for design of biomaterials based on recombinant analogs of spider silk proteins
VG Bogush, OS Sokolova, LI Davydova, DV Klinov, KV Sidoruk, ...
Journal of neuroimmune pharmacology 4, 17-27, 2009
1262009
Short fuzzy tandem repeats in genomic sequences, identification, and possible role in regulation of gene expression
V Boeva, M Regnier, D Papatsenko, V Makeev
Bioinformatics 22 (6), 676-684, 2006
1182006
Distance preferences in the arrangement of binding motifs and hierarchical levels in organization of transcription regulatory information
VJ Makeev, AP Lifanov, AG Nazina, DA Papatsenko
Nucleic acids research 31 (20), 6016-6026, 2003
1162003
Intergenic, gene terminal, and intragenic CpG islands in the human genome
YA Medvedeva, MV Fridman, NJ Oparina, DB Malko, EO Ermakova, ...
BMC genomics 11, 1-16, 2010
1152010
Extraction of functional binding sites from unique regulatory regions: the Drosophila early developmental enhancers
DA Papatsenko, VJ Makeev, AP Lifanov, M Régnier, AG Nazina, ...
Genome research 12 (3), 470-481, 2002
1152002
Jaccard index based similarity measure to compare transcription factor binding site models
IE Vorontsov, IV Kulakovskiy, VJ Makeev
Algorithms for Molecular Biology 8, 1-11, 2013
932013
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