| A faecal microbiota signature with high specificity for pancreatic cancer E Kartal, TSB Schmidt, E Molina-Montes, S Rodríguez-Perales, J Wirbel, ... Gut 71 (7), 1359-1372, 2022 | 191 | 2022 |
| GUNC: detection of chimerism and contamination in prokaryotic genomes A Orakov, A Fullam, LP Coelho, S Khedkar, D Szklarczyk, DR Mende, ... Genome biology 22, 1-19, 2021 | 171 | 2021 |
| Towards the biogeography of prokaryotic genes LP Coelho, R Alves, ÁR Del Río, PN Myers, CP Cantalapiedra, ... Nature 601 (7892), 252-256, 2022 | 141 | 2022 |
| Drivers and determinants of strain dynamics following fecal microbiota transplantation TSB Schmidt, SS Li, OM Maistrenko, W Akanni, LP Coelho, S Dolai, ... Nature medicine 28 (9), 1902-1912, 2022 | 130 | 2022 |
| proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes DR Mende, I Letunic, OM Maistrenko, TSB Schmidt, A Milanese, L Paoli, ... Nucleic Acids Research 48 (D1), D621-D625, 2020 | 100 | 2020 |
| Nuclear matrix metalloproteinases: functions resemble the evolution from the intracellular to the extracellular compartment Y Xie, A Mustafa, A Yerzhan, D Merzhakupova, P Yerlan, A N Orakov, ... Cell death discovery 3 (1), 1-8, 2017 | 93 | 2017 |
| Landscape of mobile genetic elements and their antibiotic resistance cargo in prokaryotic genomes S Khedkar, G Smyshlyaev, I Letunic, OM Maistrenko, LP Coelho, ... Nucleic acids research 50 (6), 3155-3168, 2022 | 86 | 2022 |
| SPIRE: a Searchable, Planetary-scale mIcrobiome REsource TSB Schmidt, A Fullam, P Ferretti, A Orakov, OM Maistrenko, ... Nucleic Acids Research 52 (D1), D777-D783, 2024 | 31 | 2024 |
| ASAR: visual analysis of metagenomes in R AN Orakov, NK Sakenova, A Sorokin, II Goryanin Bioinformatics 34 (8), 1404-1405, 2018 | 15 | 2018 |
| Analysis of origin and protein-protein interaction maps suggests distinct oncogenic role of nuclear EGFR during cancer evolution A Sharip, D Abdukhakimova, X Wang, A Kim, Y Kim, A Sharip, A Orakov, ... Journal of Cancer 8 (5), 903, 2017 | 15 | 2017 |
| Refined Enterotyping reveals dysbiosis in global fecal metagenomes MI Keller, S Nishijima, D Podlesny, CY Kim, SM Robbani, C Schudoma, ... bioRxiv, 2024.08. 13.607711, 2024 | 4 | 2024 |
| Systematic mapping of antibiotic cross-resistance and collateral sensitivity with chemical genetics N Sakenova, E Cacace, A Orakov, F Huber, V Varik, G Kritikos, J Michiels, ... Nature Microbiology 10 (1), 202-216, 2025 | 3 | 2025 |
| ASAR Database: An R Tool for Visual Analysis and Storage of Metagenomes A Orakov, N Sakenova, I Goryanin, A Sorokin The 11th International Joint Conference on Biomedical Engineering Systems …, 2018 | 2 | 2018 |
| Bioinformatic analysis of bacterial composition and metabolic mapping of selectively enriched microbial community within Microbial Fuel Cells L Szydlowski, V Fedorovich, I Goryanin, A Orakov, N Sakenova, A Sorokin 2017 International Conference on Intelligent Informatics and Biomedical …, 2017 | 1 | 2017 |
| A conserved pilin from uncultured gut bacterial clade TANB77 enhances cancer immunotherapy CY Kim, DJ Park, BC Ahn, S Baek, MH Hong, LT Nguyen, SH Hwang, ... Nature Communications 15 (1), 10726, 2024 | | 2024 |
| Uncovering nitroxoline activity spectrum, mode of action and resistance across Gram-negative bacteria E Cacace, M Tietgen, M Steinhauer, A Mateus, TG Schultze, ... bioRxiv, 2024.06. 04.597298, 2024 | | 2024 |
| OS-073 Linking gut microbiome enterotypes and dysbiosis to liver disease severity and prognosis MI Keller, S Nishijima, D Podlesny, CY Kim, SM Robbani, C Schudoma, ... Journal of Hepatology 80, S48, 2024 | | 2024 |
| A novel computational method to analyse metagenome for understanding of microbial community composition and functional potential A Orakov, N Sakenova, I Goraynin, A Sorokin 2017 International Conference on Intelligent Informatics and Biomedical …, 2017 | | 2017 |
