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Daniel Portik
Daniel Portik
Staff Bioinformatics Scientist, PacBio
Bestätigte E-Mail-Adresse bei pacificbiosciences.com - Startseite
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Zitiert von
Zitiert von
Jahr
Evaluating mechanisms of diversification in a Guineo‐Congolian tropical forest frog using demographic model selection
DM Portik, AD Leaché, D Rivera, MF Barej, M Burger, M Hirschfeld, ...
Molecular ecology 26 (19), 5245-5263, 2017
2172017
Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities
DM Bickhart, M Kolmogorov, E Tseng, DM Portik, A Korobeynikov, ...
Nature biotechnology 40 (5), 711-719, 2022
1682022
Cryptic diversity of a widespread global pathogen reveals expanded threats to amphibian conservation
AQ Byrne, VT Vredenburg, AN Martel, F Pasmans, RC Bell, DC Blackburn, ...
Proceedings of the National Academy of Sciences 116 (41), 20382-20387, 2019
1362019
Metagenome assembly of high-fidelity long reads with hifiasm-meta
X Feng, H Cheng, D Portik, H Li
Nature methods 19 (6), 671-674, 2022
1232022
An evaluation of transcriptome‐based exon capture for frog phylogenomics across multiple scales of divergence (Class: Amphibia, Order: Anura)
DM Portik, LL Smith, K Bi
Molecular ecology resources 16 (5), 1069-1083, 2016
1122016
Genetics, Morphology, Advertisement Calls, and Historical Records Distinguish Six New Polyploid Species of African Clawed Frog (Xenopus, Pipidae) from West …
BJ Evans, TF Carter, E Greenbaum, V Gvoždík, DB Kelley, PJ McLaughlin, ...
PloS one 10 (12), e0142823, 2015
1062015
Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets
DM Portik, CT Brown, NT Pierce-Ward
BMC bioinformatics 23 (1), 541, 2022
862022
Identification of 104 rapidly-evolving nuclear protein-coding markers for amplification across scaled reptiles using genomic resources
DM Portik, PL Wood, JL Grismer, EL Stanley, TR Jackman
Conservation Genetics Resources, 1-10, 2012
842012
Sexual dichromatism drives diversification within a major radiation of African amphibians
DM Portik, RC Bell, DC Blackburn, AM Bauer, CD Barratt, WR Branch, ...
Systematic Biology 68 (6), 859-875, 2019
682019
Historical biogeography resolves the origins of endemic Arabian toad lineages (Anura: Bufonidae): Evidence for ancient vicariance and dispersal events with the Horn of Africa …
DM Portik, TJ Papenfuss
BMC Evolutionary Biology 15, 1-19, 2015
652015
Diversity and biogeography of frogs in the genus Amnirana (Anura: Ranidae) across sub-Saharan Africa
GFM Jongsma, MF Barej, CD Barratt, M Burger, W Conradie, R Ernst, ...
Molecular phylogenetics and evolution 120, 274-285, 2018
612018
Vanishing refuge? Testing the forest refuge hypothesis in coastal East Africa using genome‐wide sequence data for seven amphibians
CD Barratt, BA Bwong, R Jehle, HC Liedtke, P Nagel, RE Onstein, ...
Molecular Ecology 27 (21), 4289-4308, 2018
582018
Idiosyncratic responses to climate‐driven forest fragmentation and marine incursions in reed frogs from Central Africa and the Gulf of Guinea Islands
RC Bell, JL Parra, G Badjedjea, MF Barej, DC Blackburn, M Burger, ...
Molecular Ecology 26 (19), 5223-5244, 2017
582017
Frog phylogeny: a time-calibrated, species-level tree based on hundreds of loci and 5,242 species
DM Portik, JW Streicher, JJ Wiens
Molecular Phylogenetics and Evolution 188, 107907, 2023
572023
Finding the right fit: evaluation of short-read and long-read sequencing approaches to maximize the utility of clinical microbiome data
JL Gehrig, DM Portik, MD Driscoll, E Jackson, S Chakraborty, D Gratalo, ...
Microbial Genomics 8 (3), 000794, 2022
562022
West Africa-A Safe Haven for Frogs? A Sub-Continental Assessment of the Chytrid Fungus (Batrachochytrium dendrobatidis)
J Penner, GB Adum, MT McElroy, T Doherty-Bone, M Hirschfeld, ...
PLOS ONE 8 (2), e56236, 2013
542013
The evolution of reproductive diversity in Afrobatrachia: a phylogenetic comparative analysis of an extensive radiation of African frogs
DM Portik, DC Blackburn
Evolution 70 (9), 2017-2032, 2016
532016
Molecular phylogeny of Panaspis and Afroablepharus skinks (Squamata: Scincidae) in the savannas of sub-Saharan Africa
MF Medina, AM Bauer, WR Branch, A Schmitz, W Conradie, ZT Nagy, ...
Molecular Phylogenetics and Evolution 100, 409-423, 2016
532016
FrogCap: A modular sequence capture probe‐set for phylogenomics and population genetics for all frogs, assessed across multiple phylogenetic scales
CR Hutter, KA Cobb, DM Portik, SL Travers, PL Wood Jr, RM Brown
Molecular Ecology Resources 22 (3), 1100-1119, 2022
522022
Bridging the gap: western rock skinks (Trachylepis sulcata) have a short history in South Africa
DM Portik, AM Bauer, TR Jackman
Molecular Ecology 20 (8), 1744-1758, 2011
522011
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