| Proteogenomics connects somatic mutations to signalling in breast cancer P Mertins, DR Mani, KV Ruggles, MA Gillette, KR Clauser, P Wang, ... Nature 534 (7605), 55-62, 2016 | 1676 | 2016 |
| Phosphoproteomic analysis of chimeric antigen receptor signaling reveals kinetic and quantitative differences that affect cell function AI Salter, RG Ivey, JJ Kennedy, V Voillet, A Rajan, EJ Alderman, ... Science signaling 11 (544), eaat6753, 2018 | 460 | 2018 |
| A targeted proteomics–based pipeline for verification of biomarkers in plasma JR Whiteaker, C Lin, J Kennedy, L Hou, M Trute, I Sokal, P Yan, ... Nature biotechnology 29 (7), 625-634, 2011 | 410 | 2011 |
| A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS M Bellew, M Coram, M Fitzgibbon, M Igra, T Randolph, P Wang, D May, ... Bioinformatics 22 (15), 1902-1909, 2006 | 328 | 2006 |
| Integrative analysis of drug response and clinical outcome in acute myeloid leukemia D Bottomly, N Long, AR Schultz, SE Kurtz, CE Tognon, K Johnson, M Abel, ... Cancer cell 40 (8), 850-864. e9, 2022 | 217 | 2022 |
| Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins JJ Kennedy, SE Abbatiello, K Kim, P Yan, JR Whiteaker, C Lin, JS Kim, ... Nature methods 11 (2), 149-155, 2014 | 201 | 2014 |
| Computational Proteomics Analysis System (CPAS): an extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments A Rauch, M Bellew, J Eng, M Fitzgibbon, T Holzman, P Hussey, M Igra, ... Journal of proteome research 5 (1), 112-121, 2006 | 200 | 2006 |
| Head-to-head comparison of serum fractionation techniques JR Whiteaker, H Zhang, JK Eng, R Fang, BD Piening, LC Feng, ... Journal of Proteome Research 6 (2), 828-836, 2007 | 191 | 2007 |
| Evaluation of large scale quantitative proteomic assay development using peptide affinity-based mass spectrometry JR Whiteaker, L Zhao, SE Abbatiello, M Burgess, E Kuhn, CW Lin, ... Molecular & cellular proteomics 10 (4), 2011 | 158 | 2011 |
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| A highly annotated database of genes associated with platinum resistance in cancer D Huang, SR Savage, AP Calinawan, C Lin, B Zhang, P Wang, TK Starr, ... Oncogene 40 (46), 6395-6405, 2021 | 94 | 2021 |
| Genomic landscape of neutrophilic leukemias of ambiguous diagnosis H Zhang, B Wilmot, D Bottomly, KHT Dao, E Stevens, CA Eide, V Khanna, ... Blood, The Journal of the American Society of Hematology 134 (11), 867-879, 2019 | 84 | 2019 |
| Sequential multiplexed analyte quantification using peptide immunoaffinity enrichment coupled to mass spectrometry JR Whiteaker, L Zhao, C Lin, P Yan, P Wang, AG Paulovich Molecular & Cellular Proteomics 11 (6), 2012 | 75 | 2012 |
| Peptide immunoaffinity enrichment and targeted mass spectrometry enables multiplex, quantitative pharmacodynamic studies of phospho-signaling JR Whiteaker, L Zhao, P Yan, RG Ivey, UJ Voytovich, HD Moore, C Lin, ... Molecular & cellular proteomics 14 (8), 2261-2273, 2015 | 63 | 2015 |
| Multiplexed quantification of estrogen receptor and HER 2/N eu in tissue and cell lysates by peptide immunoaffinity enrichment mass spectrometry RM Schoenherr, JR Whiteaker, L Zhao, RG Ivey, M Trute, J Kennedy, ... Proteomics 12 (8), 1253-1260, 2012 | 57 | 2012 |
| Immobilized metal affinity chromatography coupled to multiple reaction monitoring enables reproducible quantification of phospho-signaling JJ Kennedy, P Yan, L Zhao, RG Ivey, UJ Voytovich, HD Moore, C Lin, ... Molecular & Cellular Proteomics 15 (2), 726-739, 2016 | 53 | 2016 |
| Multiomic analysis identifies CPT1A as a potential therapeutic target in platinum-refractory, high-grade serous ovarian cancer D Huang, S Chowdhury, H Wang, SR Savage, RG Ivey, JJ Kennedy, ... Cell Reports Medicine 2 (12), 2021 | 44 | 2021 |
| Quantification of human epidermal growth factor receptor 2 by immunopeptide enrichment and targeted mass spectrometry in formalin-fixed paraffin-embedded and frozen breast … JJ Kennedy, JR Whiteaker, LC Kennedy, DE Bosch, ML Lerch, ... Clinical chemistry 67 (7), 1008-1018, 2021 | 39 | 2021 |
| Proteogenomic analysis of chemo-refractory high-grade serous ovarian cancer S Chowdhury, JJ Kennedy, RG Ivey, OD Murillo, N Hosseini, X Song, ... Cell 186 (16), 3476-3498. e35, 2023 | 28 | 2023 |
| A multiplexed mass spectrometry-based assay for robust quantification of phosphosignaling in response to DNA damage JR Whiteaker, L Zhao, R Saul, JA Kaczmarczyk, RM Schoenherr, ... Radiation research 189 (5), 505-518, 2018 | 27 | 2018 |
