| Multiplexed labeling of genomic loci with dCas9 and engineered sgRNAs using CRISPRainbow H Ma, LC Tu, A Naseri, M Huisman, S Zhang, D Grunwald, T Pederson Nature biotechnology 34 (5), 528-530, 2016 | 512 | 2016 |
| Multicolor CRISPR labeling of chromosomal loci in human cells H Ma, A Naseri, P Reyes-Gutierrez, SA Wolfe, S Zhang, T Pederson Proceedings of the National Academy of Sciences 112 (10), 3002-3007, 2015 | 487 | 2015 |
| DeepCRISPR: optimized CRISPR guide RNA design by deep learning G Chuai, H Ma, J Yan, M Chen, N Hong, D Xue, C Zhou, C Zhu, K Chen, ... Genome biology 19, 1-18, 2018 | 430 | 2018 |
| CRISPR-Cas9 nuclear dynamics and target recognition in living cells H Ma, LC Tu, A Naseri, M Huisman, S Zhang, D Grunwald, T Pederson Journal of Cell Biology 214 (5), 529-537, 2016 | 219 | 2016 |
| CRISPR-Sirius: RNA scaffolds for signal amplification in genome imaging H Ma, LC Tu, A Naseri, YC Chung, D Grunwald, S Zhang, T Pederson Nature methods 15 (11), 928-931, 2018 | 160 | 2018 |
| Visualization of repetitive DNA sequences in human chromosomes with transcription activator-like effectors H Ma, P Reyes-Gutierrez, T Pederson Proceedings of the National Academy of Sciences 110 (52), 21048-21053, 2013 | 149 | 2013 |
| Depletion of the nucleolar protein nucleostemin causes G1 cell cycle arrest via the p53 pathway H Ma, T Pederson Molecular biology of the cell 18 (7), 2630-2635, 2007 | 146 | 2007 |
| Cas9 effector-mediated regulation of transcription, differentiation and gene editing/labeling SA Wolfe, H Ma, T Pederson, MSK Enuameh, NA Kearns, RMJ Genga, ... US Patent App. 14/571,818, 2015 | 97 | 2015 |
| Eliminating base-editor-induced genome-wide and transcriptome-wide off-target mutations L Wang, W Xue, H Zhang, R Gao, H Qiu, J Wei, L Zhou, YN Lei, X Wu, X Li, ... Nature Cell Biology 23 (5), 552-563, 2021 | 83 | 2021 |
| Model-based understanding of single-cell CRISPR screening B Duan, C Zhou, C Zhu, Y Yu, G Li, S Zhang, C Zhang, X Ye, H Ma, S Qu, ... Nature communications 10 (1), 2233, 2019 | 81 | 2019 |
| Nucleostemin: a multiplex regulator of cell-cycle progression H Ma, T Pederson Trends in cell biology 18 (12), 575-579, 2008 | 78 | 2008 |
| The nucleolus stress response is coupled to an ATR-Chk1–mediated G2 arrest H Ma, T Pederson Molecular biology of the cell 24 (9), 1334-1342, 2013 | 55 | 2013 |
| Simultaneous epigenetic perturbation and genome imaging reveal distinct roles of H3K9me3 in chromatin architecture and transcription Y Feng, Y Wang, X Wang, X He, C Yang, A Naseri, T Pederson, J Zheng, ... Genome biology 21, 1-24, 2020 | 52 | 2020 |
| Cell cycle–and genomic distance–dependent dynamics of a discrete chromosomal region H Ma, LC Tu, YC Chung, A Naseri, D Grunwald, S Zhang, T Pederson Journal of Cell Biology 218 (5), 1467-1477, 2019 | 52 | 2019 |
| A highly efficient multifunctional tandem affinity purification approach applicable to diverse organisms H Ma, JR McLean, LFI Chao, S Mana-Capelli, M Paramasivam, ... Molecular & Cellular Proteomics 11 (8), 501-511, 2012 | 47 | 2012 |
| Nucleophosmin is a binding partner of nucleostemin in human osteosarcoma cells H Ma, T Pederson Molecular biology of the cell 19 (7), 2870-2875, 2008 | 46 | 2008 |
| Human acyl-coenzyme A: cholesterol acyltransferase 1 (acat1) sequences located in two different chromosomes (7 and 1) are required to produce a novel ACAT1 isoenzyme with … L Yang, O Lee, J Chen, J Chen, CCY Chang, P Zhou, ZZ Wang, HH Ma, ... Journal of Biological Chemistry 279 (44), 46253-46262, 2004 | 43 | 2004 |
| Enhancing prime editing efficiency and flexibility with tethered and split pegRNAs Y Feng, S Liu, Q Mo, P Liu, X Xiao, H Ma Protein & Cell 14 (4), 304-308, 2023 | 40 | 2023 |
| STRIDE—a fluorescence method for direct, specific in situ detection of individual single- or double-strand DNA breaks in fixed cells MM Kordon, M Zarębski, K Solarczyk, H Ma, T Pederson, JW Dobrucki Nucleic Acids Research 48 (3), e14-e14, 2020 | 38 | 2020 |
| PPARγ phase separates with RXRα at PPREs to regulate target gene expression Z Li, L Luo, W Yu, P Li, D Ou, J Liu, H Ma, Q Sun, A Liang, C Huang, T Chi, ... Cell Discovery 8 (1), 37, 2022 | 29 | 2022 |
