| Deep profiling of mouse splenic architecture with CODEX multiplexed imaging Y Goltsev, N Samusik, J Kennedy-Darling, S Bhate, M Hale, G Vazquez, ... Cell 174 (4), 968-981. e15, 2018 | 1242 | 2018 |
| Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive front CM Schürch, SS Bhate, GL Barlow, DJ Phillips, L Noti, I Zlobec, P Chu, ... Cell 182 (5), 1341-1359. e19, 2020 | 756 | 2020 |
| CRISPR activation screens systematically identify factors that drive neuronal fate and reprogramming Y Liu, C Yu, TP Daley, F Wang, WS Cao, S Bhate, X Lin, C Still, H Liu, ... Cell stem cell 23 (5), 758-771. e8, 2018 | 197 | 2018 |
| Immune cell topography predicts response to PD-1 blockade in cutaneous T cell lymphoma D Phillips, M Matusiak, BR Gutierrez, SS Bhate, GL Barlow, S Jiang, ... Nature Communications 12 (1), 6726, 2021 | 154 | 2021 |
| Highly multiplexed tissue imaging using repeated oligonucleotide exchange reaction J Kennedy‐Darling, SS Bhate, JW Hickey, S Black, GL Barlow, G Vazquez, ... European Journal of Immunology 51 (5), 1262-1277, 2021 | 86 | 2021 |
| CellSeg: a robust, pre-trained nucleus segmentation and pixel quantification software for highly multiplexed fluorescence images MY Lee, JS Bedia, SS Bhate, GL Barlow, D Phillips, WJ Fantl, GP Nolan, ... BMC bioinformatics 23 (1), 46, 2022 | 80 | 2022 |
| Linear causal disentanglement via interventions C Squires, A Seigal, SS Bhate, C Uhler International Conference on Machine Learning, 32540-32560, 2023 | 74 | 2023 |
| Tissue schematics map the specialization of immune tissue motifs and their appropriation by tumors SS Bhate, GL Barlow, CM Schürch, GP Nolan Cell Systems 13 (2), 109-130. e6, 2022 | 70 | 2022 |
| Subcellular localization of biomolecules and drug distribution by high-definition ion beam imaging X Rovira-Clavé, S Jiang, Y Bai, B Zhu, G Barlow, S Bhate, AF Coskun, ... Nature Communications 12 (1), 4628, 2021 | 53 | 2021 |
| Immunotherapy of glioblastoma explants induces interferon-γ responses and spatial immune cell rearrangements in tumor center, but not periphery T Shekarian, CP Zinner, EM Bartoszek, W Duchemin, AT Wachnowicz, ... Science Advances 8 (26), eabn9440, 2022 | 39 | 2022 |
| Landscape of coordinated immune responses to H1N1 challenge in humans Z Rahil, R Leylek, CM Schürch, H Chen, Z Bjornson-Hooper, ... The Journal of clinical investigation 130 (11), 5800-5816, 2020 | 37 | 2020 |
| A tissue atlas of ulcerative colitis revealing evidence of sex-dependent differences in disease-driving inflammatory cell types and resistance to TNF inhibitor therapy AT Mayer, DR Holman, A Sood, U Tandon, SS Bhate, S Bodapati, ... Science Advances 9 (3), eadd1166, 2023 | 22 | 2023 |
| Splenic red pulp macrophages provide a niche for CML stem cells and induce therapy resistance ED Bührer, MA Amrein, S Forster, S Isringhausen, CM Schürch, SS Bhate, ... Leukemia 36 (11), 2634-2646, 2022 | 14 | 2022 |
| A multi-modal neural network for learning cis and trans regulation of stress response in yeast B Liu, N Hussami, A Shrikumar, T Shimko, S Bhate, S Longwell, ... arXiv preprint arXiv:1908.09426, 2019 | 7 | 2019 |
| Dynamics of the cutaneous T cell lymphoma microenvironment in patients treated with pembrolizumab revealed by highly multiplexed tissue imaging CM Schuerch, DJ Phillips, SS Bhate, GL Barlow, SP Fling, N Ramchurren, ... Blood 134, 1521, 2019 | 6 | 2019 |
| Subcellular localization of drug distribution by super-resolution ion beam imaging X Rovira-Clave, S Jiang, Y Bai, G Barlow, S Bhate, AF Coskun, G Han, ... bioRxiv, 557603, 2019 | 6 | 2019 |
| Dynamics of the bone marrow microenvironment during leukemic progression revealed by codex hyper-parameter tissue imaging C Schuerch, GL Barlow, SS Bhate, N Samusik, GP Nolan, Y Goltsev Blood 132, 935, 2018 | 4 | 2018 |
| The extra-islet pancreas supports autoimmunity in human type 1 diabetes GL Barlow, CM Schürch, SS Bhate, D Phillips, A Young, S Dong, ... medRxiv, 2023.03. 15.23287145, 2023 | 2 | 2023 |
| Towards semantic representations of tissue organization from high-parameter imaging data SS Bhate Stanford University, 2021 | 2 | 2021 |
| O3 High-dimensional analysis of tumor architecture predicts cancer immunotherapy response CM Schürch, DJ Phillips, M Matusiak, BR Gutierrez, SS Bhate, GL Barlow, ... Journal for ImmunoTherapy of Cancer 8 (Suppl 2), 2020 | 2 | 2020 |
