| NanoSolveIT Project: Driving nanoinformatics research to develop innovative and integrated tools for in silico nanosafety assessment A Afantitis, G Melagraki, P Isigonis, A Tsoumanis, DD Varsou, ... Computational and Structural Biotechnology Journal 18, 583-602, 2020 | 117 | 2020 |
| FunMappOne: a tool to hierarchically organize and visually navigate functional gene annotations in multiple experiments G Scala, A Serra, VS Marwah, LA Saarimäki, D Greco BMC bioinformatics 20, 1-7, 2019 | 40 | 2019 |
| Manually curated transcriptomics data collection for toxicogenomic assessment of engineered nanomaterials LA Saarimäki, A Federico, I Lynch, AG Papadiamantis, A Tsoumanis, ... Scientific data 8 (1), 49, 2021 | 32 | 2021 |
| BMDx: a graphical Shiny application to perform Benchmark Dose analysis for transcriptomics data A Serra, LA Saarimäki, M Fratello, VS Marwah, D Greco Bioinformatics 36 (9), 2932-2933, 2020 | 32 | 2020 |
| Biomarkers of nanomaterials hazard from multi-layer data V Fortino, PAS Kinaret, M Fratello, A Serra, LA Saarimäki, A Gallud, ... Nature Communications 13 (1), 3798, 2022 | 30 | 2022 |
| Factors modulating COVID-19: A mechanistic understanding based on the adverse outcome pathway framework LA Clerbaux, MC Albertini, N Amigo, A Beronius, GFG Bezemer, ... Journal of Clinical Medicine 11 (15), 4464, 2022 | 26 | 2022 |
| Toxicogenomics Data for Chemical Safety Assessment and Development of New Approach Methodologies: An Adverse Outcome Pathway‐Based Approach LA Saarimäki, J Morikka, A Pavel, S Korpilähde, G Del Giudice, ... Advanced Science 10 (2), 2203984, 2023 | 23 | 2023 |
| An ancestral molecular response to nanomaterial particulates G Del Giudice, A Serra, LA Saarimäki, K Kotsis, I Rouse, SA Colibaba, ... Nature Nanotechnology 18 (8), 957-966, 2023 | 22 | 2023 |
| Toxicogenomics analysis of dynamic dose-response in macrophages highlights molecular alterations relevant for multi-walled carbon nanotube-induced lung fibrosis LA Saarimäki, PAS Kinaret, G Scala, G del Giudice, A Federico, A Serra, ... NanoImpact 20, 100274, 2020 | 22 | 2020 |
| Transcriptomic profiling reveals differential cellular response to copper oxide nanoparticles and polystyrene nanoplastics in perfused human placenta S Chortarea, G Gupta, LA Saarimäki, W Netkueakul, P Manser, ... Environment International 177, 108015, 2023 | 21 | 2023 |
| Computationally prioritized drugs inhibit SARS-CoV-2 infection and syncytia formation A Serra, M Fratello, A Federico, R Ojha, R Provenzani, E Tasnadi, ... Briefings in bioinformatics 23 (1), bbab507, 2022 | 21 | 2022 |
| TinderMIX: Time-dose integrated modelling of toxicogenomics data A Serra, M Fratello, G Del Giudice, LA Saarimäki, M Paci, A Federico, ... Gigascience 9 (5), giaa055, 2020 | 20 | 2020 |
| Systems toxicology to advance human and environmental hazard assessment: A roadmap for advanced materials MJB Amorim, W Peijnenburg, D Greco, LA Saarimäki, VI Dumit, A Bahl, ... Nano Today 48, 101735, 2023 | 18 | 2023 |
| Prospects and challenges for FAIR toxicogenomics data LA Saarimäki, G Melagraki, A Afantitis, I Lynch, D Greco Nature Nanotechnology 17 (1), 17-18, 2022 | 13 | 2022 |
| A curated gene and biological system annotation of adverse outcome pathways related to human health LA Saarimäki, M Fratello, A Pavel, S Korpilähde, J Leppänen, A Serra, ... Scientific Data 10 (1), 409, 2023 | 11 | 2023 |
| The potential of a data centred approach & knowledge graph data representation in chemical safety and drug design A Pavel, LA Saarimäki, L Möbus, A Federico, A Serra, D Greco Computational and structural biotechnology journal 20, 4837-4849, 2022 | 11 | 2022 |
| Nextcast: a software suite to analyse and model toxicogenomics data A Serra, LA Saarimäki, A Pavel, G Del Giudice, M Fratello, L Cattelani, ... Computational and structural biotechnology journal 20, 1413-1426, 2022 | 10 | 2022 |
| A network toxicology approach for mechanistic modelling of nanomaterial hazard and adverse outcomes G Del Giudice, A Serra, A Pavel, M Torres Maia, LA Saarimäki, M Fratello, ... Advanced Science 11 (32), 2400389, 2024 | 7 | 2024 |
| Characterization of ENM dynamic dose-dependent MOA in lung with respect to immune cells infiltration A Serra, G Del Giudice, PAS Kinaret, LA Saarimäki, SS Poulsen, V Fortino, ... Nanomaterials 12 (12), 2031, 2022 | 7 | 2022 |
| Microarray data preprocessing: From experimental design to differential analysis A Federico, LA Saarimäki, A Serra, G Del Giudice, PAS Kinaret, G Scala, ... Microarray Data Analysis, 79-100, 2022 | 6 | 2022 |
