Παρακολούθηση
Jai Ram Rideout
Jai Ram Rideout
One Codex
Η διεύθυνση ηλεκτρονικού ταχυδρομείου έχει επαληθευτεί στον τομέα onecodex.com
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Παρατίθεται από
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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
174282019
Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin
NA Bokulich, BD Kaehler, JR Rideout, M Dillon, E Bolyen, R Knight, ...
Microbiome 6, 1-17, 2018
45852018
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
10412018
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome
D McDonald, JC Clemente, J Kuczynski, JR Rideout, J Stombaugh, ...
Gigascience 1 (1), 2047-217X-1-7, 2012
8332012
Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences
JR Rideout, Y He, JA Navas-Molina, WA Walters, LK Ursell, SM Gibbons, ...
PeerJ 2, e545, 2014
6472014
Qiita: rapid, web-enabled microbiome meta-analysis
A Gonzalez, JA Navas-Molina, T Kosciolek, D McDonald, ...
Nature methods 15 (10), 796-798, 2018
6102018
Temporal variability is a personalized feature of the human microbiome
GE Flores, JG Caporaso, JB Henley, JR Rideout, D Domogala, J Chase, ...
Genome biology 15, 1-13, 2014
4822014
The interpersonal and intrapersonal diversity of human-associated microbiota in key body sites
LK Ursell, JC Clemente, JR Rideout, D Gevers, JG Caporaso, R Knight
Journal of Allergy and Clinical Immunology 129 (5), 1204-1208, 2012
4142012
q2-longitudinal: longitudinal and paired-sample analyses of microbiome data
NA Bokulich, MR Dillon, Y Zhang, JR Rideout, E Bolyen, H Li, PS Albert, ...
MSystems 3 (6), 10.1128/msystems. 00219-18, 2018
2262018
Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity
Y He, JG Caporaso, XT Jiang, HF Sheng, SM Huse, JR Rideout, ...
Microbiome 3, 1-10, 2015
2012015
QIIME 2: reproducible, interactive, scalable, and extensible microbiome data science. PeerJ
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
Inc 6, e27295v2, 2018
1932018
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome. Gigascience 1: 7
D McDonald, JC Clemente, J Kuczynski, JR Rideout, J Stombaugh, ...
1372012
mockrobiota: a public resource for microbiome bioinformatics benchmarking
NA Bokulich, JR Rideout, WG Mercurio, A Shiffer, B Wolfe, CF Maurice, ...
Msystems 1 (5), 10.1128/msystems. 00062-16, 2016
702016
Gut microbial and short-chain fatty acid profiles in adults with chronic constipation before and after treatment with lubiprostone
DW Kang, JK DiBaise, ZE Ilhan, MD Crowell, JR Rideout, JG Caporaso, ...
Anaerobe 33, 33-41, 2015
672015
Ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses
J Fouquier, JR Rideout, E Bolyen, J Chase, A Shiffer, D McDonald, ...
Microbiome 4, 1-10, 2016
662016
Keemei: cloud-based validation of tabular bioinformatics file formats in Google Sheets
JR Rideout, JH Chase, E Bolyen, G Ackermann, A González, R Knight, ...
Gigascience 5 (1), s13742-016-0133-6, 2016
622016
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nat Biotechnol 37 (8), 852-7, 2019
502019
Optimizing taxonomic classification of marker gene amplicon sequences
NA Bokulich, BD Kaehler, JR Rideout, M Dillon, E Bolyen, R Knight, ...
PeerJ Preprints 6, e3208v2, 2018
442018
A standardized, extensible framework for optimizing classification improves marker-gene taxonomic assignments
NA Bokulich, JR Rideout, E Kopylova, E Bolyen, J Patnode, Z Ellett, ...
PeerJ PrePrints 3, e934v2, 2015
362015
Sunpy: A python package for solar physics
S Mumford, N Freij, S Christe, J Ireland, F Mayer, V Hughitt, A Shih, ...
Journal of Open Source Software 5 (46), 2020
342020
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