| Protein structure generation via folding diffusion KE Wu, KK Yang, R van den Berg, S Alamdari, JY Zou, AX Lu, AP Amini Nature communications 15 (1), 1059, 2024 | 171 | 2024 |
| Convolutions are competitive with transformers for protein sequence pretraining KK Yang, N Fusi, AX Lu Cell Systems 15 (3), 286-294. e2, 2024 | 108 | 2024 |
| Learning unsupervised feature representations for single cell microscopy images with paired cell inpainting AX Lu, OZ Kraus, S Cooper, AM Moses PLoS computational biology 15 (9), e1007348, 2019 | 106 | 2019 |
| Protein generation with evolutionary diffusion: sequence is all you need S Alamdari, N Thakkar, R van den Berg, N Tenenholtz, B Strome, ... BioRxiv, 2023.09. 11.556673, 2023 | 96* | 2023 |
| YeastSpotter: accurate and parameter-free web segmentation for microscopy images of yeast cells AX Lu, T Zarin, IS Hsu, AM Moses Bioinformatics 35 (21), 4525-4527, 2019 | 93 | 2019 |
| Enhanced collagen type I synthesis by human tenocytes subjected to periodic in vitro mechanical stimulation E Huisman, A Lu, RG McCormack, A Scott BMC musculoskeletal disorders 15, 1-8, 2014 | 65 | 2014 |
| Mast cells exert pro-inflammatory effects of relevance to the pathophyisology of tendinopathy H Behzad, A Sharma, R Mousavizadeh, A Lu, A Scott Arthritis research & therapy 15, 1-11, 2013 | 65 | 2013 |
| Accumulation of oxidized LDL in the tendon tissues of C57BL/6 or apolipoprotein E knock-out mice that consume a high fat diet: potential impact on tendon health N Grewal, GM Thornton, H Behzad, A Sharma, A Lu, P Zhang, WD Reid, ... PloS one 9 (12), e114214, 2014 | 51 | 2014 |
| Podocalyxin Regulates Murine Lung Vascular Permeability by Altering Endothelial Cell Adhesion (vol 9, e108881, 2014) EJ Debruin, MR Hughes, C Sina, A Lu, J Cait PLOS ONE 9 (12), 2014 | 40 | 2014 |
| Discovering molecular features of intrinsically disordered regions by using evolution for contrastive learning AX Lu, AX Lu, I Pritišanac, T Zarin, JD Forman-Kay, AM Moses PLOS Computational Biology 18 (6), e1010238, 2022 | 36 | 2022 |
| Integrating images from multiple microscopy screens reveals diverse patterns of change in the subcellular localization of proteins AX Lu, YT Chong, IS Hsu, B Strome, LF Handfield, O Kraus, BJ Andrews, ... Elife 7, e31872, 2018 | 31 | 2018 |
| Feature reuse and scaling: Understanding transfer learning with protein language models FZ Li, AP Amini, Y Yue, KK Yang, AX Lu bioRxiv, 2024.02. 05.578959, 2024 | 30* | 2024 |
| Angiopoietin‐like 4 promotes angiogenesis in the tendon and is increased in cyclically loaded tendon fibroblasts R Mousavizadeh, A Scott, A Lu, GS Ardekani, H Behzad, K Lundgreen, ... The Journal of physiology 594 (11), 2971-2983, 2016 | 30 | 2016 |
| ASL citizen: a community-sourced dataset for advancing isolated sign language recognition A Desai, L Berger, F Minakov, N Milano, C Singh, K Pumphrey, R Ladner, ... Advances in Neural Information Processing Systems 36, 2024 | 28 | 2024 |
| Assessing the limits of zero-shot foundation models in single-cell biology KZ Kedzierska, L Crawford, AP Amini, AX Lu bioRxiv, 2023.10. 16.561085, 2023 | 28 | 2023 |
| The Cells Out of Sample (COOS) dataset and benchmarks for measuring out-of-sample generalization of image classifiers AX Lu, A Lu, W Schormann, M Ghassemi, D Andrews, A Moses Advances in Neural Information Processing Systems, 1854-1862, 2019 | 20 | 2019 |
| An unsupervised kNN method to systematically detect changes in protein localization in high-throughput microscopy images AX Lu, AM Moses PloS one 11 (7), e0158712, 2016 | 20 | 2016 |
| Improved conditional flow models for molecule to image synthesis K Yang, S Goldman, W Jin, A Lu, R Barzilay, T Jaakkola, C Uhler arXiv preprint arXiv:2006.08532, 2020 | 18* | 2020 |
| Influence of repetitive mechanical loading on MMP2 activity in tendon fibroblasts E Huisman, A Lu, S Jamil, R Mousavizadeh, R McCormack, C Roberts, ... Journal of Orthopaedic Research 34 (11), 1991-2000, 2016 | 16 | 2016 |
| Incorporating knowledge of plates in batch normalization improves generalization of deep learning for microscopy images A Lin, A Lu Machine Learning in Computational Biology, 74-93, 2022 | 14 | 2022 |
