| Yeast as a cell factory: current state and perspectives M Kavšček, M Stražar, T Curk, K Natter, U Petrovič Microbial cell factories 14, 1-10, 2015 | 165 | 2015 |
| openTSNE: a modular Python library for t-SNE dimensionality reduction and embedding PG Poličar, M Stražar, B Zupan Journal of Statistical Software 109, 1-30, 2024 | 159 | 2024 |
| Orthogonal matrix factorization enables integrative analysis of multiple RNA binding proteins M Stražar, M Žitnik, B Zupan, J Ule, T Curk Bioinformatics 32 (10), 1527-1535, 2016 | 130 | 2016 |
| A bistable genetic switch based on designable DNA-binding domains T Lebar, U Bezeljak, A Golob, M Jerala, L Kadunc, B Pirš, M Stražar, ... Nature communications 5 (1), 5007, 2014 | 99 | 2014 |
| Mobile genetic elements from the maternal microbiome shape infant gut microbial assembly and metabolism T Vatanen, KS Jabbar, T Ruohtula, J Honkanen, J Avila-Pacheco, ... Cell 185 (26), 4921-4936. e15, 2022 | 92 | 2022 |
| Democratized image analytics by visual programming through integration of deep models and small-scale machine learning P Godec, M Pančur, N Ilenič, A Čopar, M Stražar, A Erjavec, A Pretnar, ... Nature communications 10 (1), 4551, 2019 | 88 | 2019 |
| A distinct clade of Bifidobacterium longum in the gut of Bangladeshi children thrives during weaning T Vatanen, QY Ang, L Siegwald, SA Sarker, CI Le Roy, S Duboux, ... Cell 185 (23), 4280-4297. e12, 2022 | 64 | 2022 |
| Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations M Stražar, GS Temba, H Vlamakis, VI Kullaya, F Lyamuya, BT Mmbaga, ... Nature communications 12 (1), 4845, 2021 | 58 | 2021 |
| Gut microbiome and metabolome profiling in Framingham heart study reveals cholesterol-metabolizing bacteria C Li, M Stražar, AMT Mohamed, JA Pacheco, RL Walker, T Lebar, S Zhao, ... Cell 187 (8), 1834-1852. e19, 2024 | 50 | 2024 |
| Spatial host–microbiome sequencing reveals niches in the mouse gut B Lötstedt, M Stražar, R Xavier, A Regev, S Vickovic Nature Biotechnology 42 (9), 1394-1403, 2024 | 45 | 2024 |
| The influence of the gut microbiome on BCG-induced trained immunity M Stražar, VP Mourits, VACM Koeken, LCJ de Bree, SJ Moorlag, ... Genome biology 22, 1-22, 2021 | 43 | 2021 |
| Annotating metabolite mass spectra with domain-inspired chemical formula transformers S Goldman, J Wohlwend, M Stražar, G Haroush, RJ Xavier, CW Coley Nature Machine Intelligence 5 (9), 965-979, 2023 | 41 | 2023 |
| Embedding to reference t-SNE space addresses batch effects in single-cell classification PG Poličar, M Stražar, B Zupan Machine Learning 112 (2), 721-740, 2023 | 36 | 2023 |
| Linking microbial genes to plasma and stool metabolites uncovers host-microbial interactions underlying ulcerative colitis disease course M Schirmer, M Stražar, J Avila-Pacheco, DF Rojas-Tapias, EM Brown, ... Cell Host & Microbe 32 (2), 209-226. e7, 2024 | 24 | 2024 |
| HLA-II immunopeptidome profiling and deep learning reveal features of antigenicity to inform antigen discovery M Stražar, J Park, JG Abelin, HB Taylor, TK Pedersen, DR Plichta, ... Immunity 56 (7), 1681-1698. e13, 2023 | 19 | 2023 |
| Commensal consortia decolonize Enterobacteriaceae via ecological control M Furuichi, T Kawaguchi, MM Pust, K Yasuma-Mitobe, DR Plichta, ... Nature 633 (8031), 878-886, 2024 | 18 | 2024 |
| scOrange—A tool for hands-on training of concepts from single-cell data analytics M Stražar, L Žagar, J Kokošar, V Tanko, A Erjavec, PG Poličar, A Starič, ... Bioinformatics 35 (14), i4-i12, 2019 | 17 | 2019 |
| An adaptive genetic algorithm for parameter estimation of biological oscillator models to achieve target quantitative system response M Stražar, M Mraz, N Zimic, M Moškon Natural computing 13, 119-127, 2014 | 10 | 2014 |
| Learning the kernel matrix via predictive low-rank approximations M Stražar, T Curk arXiv preprint arXiv:1601.04366, 2016 | 9 | 2016 |
| Artificial Intelligence in Medicine: 17th Conference on Artificial Intelligence in Medicine, AIME 2019, Poznan, Poland, June 26–29, 2019, Proceedings D Riaño, S Wilk, A Ten Teije Springer, 2019 | 8 | 2019 |
