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Sophie Abby
Sophie Abby
CNRS researcher, Université Grenoble Alpes
Η διεύθυνση ηλεκτρονικού ταχυδρομείου έχει επαληθευτεί στον τομέα univ-grenoble-alpes.fr - Αρχική σελίδα
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Identification of protein secretion systems in bacterial genomes
SS Abby, J Cury, J Guglielmini, B Néron, M Touchon, EPC Rocha
Scientific reports 6, 23080, 2016
3972016
MacSyFinder: A Program to Mine Genomes for Molecular Systems with an Application to CRISPR-Cas Systems
SS Abby, B Néron, H Ménager, M Touchon, EPC Rocha
PLOS ONE 9 (10), e110726, 2014
3702014
The Non-Flagellar Type III Secretion System Evolved from the Bacterial Flagellum and Diversified into Host-Cell Adapted Systems
SS Abby, EPC Rocha
PLoS Genetics 8 (9), e1002983, 2012
3442012
Key components of the eight classes of type IV secretion systems involved in bacterial conjugation or protein secretion
J Guglielmini, B Néron, SS Abby, MP Garcillán-Barcia, F de la Cruz, ...
Nucleic acids research 42 (9), 5715-5727, 2014
2272014
Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations
GJ Szöllősi, B Boussau, SS Abby, E Tannier, V Daubin
Proceedings of the National Academy of Sciences 109 (43), 17513-17518, 2012
1982012
Proteomics and comparative genomics of Nitrososphaera viennensis reveal the core genome and adaptations of archaeal ammonia oxidizers
M Kerou, P Offre, L Valledor, SS Abby, M Melcher, M Nagler, ...
Proceedings of the National Academy of Sciences 113 (49), E7937-E7946, 2016
1912016
Lateral gene transfer as a support for the tree of life
SS Abby, E Tannier, M Gouy, V Daubin
Proceedings of the National Academy of Sciences 109 (13), 4962-4967, 2012
1532012
Diversification of the type IV filament superfamily into machines for adhesion, protein secretion, DNA uptake, and motility
R Denise, SS Abby, EPC Rocha
PLOS Biology 17 (7), e3000390, 2019
1522019
Comparative genomics and the evolution of prokaryotes
S Abby, V Daubin
Trends in microbiology 15 (3), 135-141, 2007
1152007
Candidatus Nitrosocaldus cavascurensis, an ammonia oxidizing, extremely thermophilic archaeon with a highly mobile genome
SS Abby, M Melcher, M Kerou, M Krupovic, M Stieglmeier, C Rossel, ...
Frontiers in Microbiology, 28, 2018
932018
Identification of Protein Secretion Systems in Bacterial Genomes Using MacSyFinder
SS Abby, EPC Rocha
Bacterial Protein Secretion Systems: Methods and Protocols, 1-21, 2017
852017
Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests
SS Abby, E Tannier, M Gouy, V Daubin
BMC bioinformatics 11 (1), 324, 2010
832010
Identifying conjugative plasmids and integrative conjugative elements with CONJscan
J Cury, SS Abby, O Doppelt-Azeroual, B Néron, EPC Rocha
Horizontal Gene Transfer: Methods and Protocols, 265-283, 2020
672020
Advances in bacterial pathways for the biosynthesis of ubiquinone
SS Abby, K Kazemzadeh, C Vragniau, L Pelosi, F Pierrel
Biochimica et Biophysica Acta (BBA)-Bioenergetics 1861 (11), 148259, 2020
642020
Ammonia oxidation by the arctic terrestrial thaumarchaeote Ca. Nitrosocosmicus arcticus is stimulated by increasing temperatures
RJE Alves, M Kerou, A Zappe, R Bittner, SS Abby, H Schmidt, K Pfeifer, ...
Frontiers in Microbiology 10, 1571, 2019
64*2019
Immune Subversion and Quorum-Sensing Shape the Variation in Infectious Dose among Bacterial Pathogens
JA Gama, SS Abby, S Vieira-Silva, F Dionisio, EPC Rocha
PLoS Pathogens 8 (2), e1002503, 2012
622012
MacSyFinder v2: Improved modelling and search engine to identify molecular systems in genomes
B Néron, R Denise, C Coluzzi, M Touchon, EPC Rocha, SS Abby
Peer Community Journal 3, 2023
542023
The Evolution of Protein Secretion Systems by Co-option and Tinkering of Cellular Machineries
R Denise, SS Abby, EPC Rocha
Trends in Microbiology 28 (5), 372-386, 2020
532020
Genomes of Thaumarchaeota from deep sea sediments reveal specific adaptations of three independently evolved lineages
M Kerou, RI Ponce-Toledo, R Zhao, SS Abby, M Hirai, H Nomaki, ...
The ISME Journal, 1-17, 2021
492021
Geochemical transition zone powering microbial growth in subsurface sediments.
R Zhao, JM Mogollón, SS Abby, C Schleper, JF Biddle, DL Roerdink, ...
Proceedings of the National Academy of Sciences of the United States of America, 2020
432020
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