Παρακολούθηση
José Alquicira-Hernández
José Alquicira-Hernández
Harvard Medical School
Η διεύθυνση ηλεκτρονικού ταχυδρομείου έχει επαληθευτεί στον τομέα bwh.harvard.edu - Αρχική σελίδα
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Παρατίθεται από
Παρατίθεται από
Έτος
Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression
Nature Genetics, 2021
1655*2021
Benchmarking of cell type deconvolution pipelines for transcriptomics data
F Avila Cobos, J Alquicira-Hernandez, JE Powell, P Mestdagh, ...
Nature communications 11 (1), 5650, 2020
3962020
scPred: accurate supervised method for cell-type classification from single-cell RNA-seq data
J Alquicira-Hernandez, A Sathe, HP Ji, Q Nguyen, JE Powell
Genome biology 20, 1-17, 2019
3892019
Single-cell eQTL mapping identifies cell type–specific genetic control of autoimmune disease
S Yazar, J Alquicira-Hernandez, K Wing, A Senabouth, MG Gordon, ...
Science 376 (6589), eabf3041, 2022
3422022
Nebulosa recovers single-cell gene expression signals by kernel density estimation
J Alquicira-Hernandez, JE Powell
Bioinformatics, 2021
2252021
Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive
A Nellore, AE Jaffe, JP Fortin, J Alquicira-Hernández, L Collado-Torres, ...
Genome biology 17, 1-14, 2016
1272016
Rail-RNA: scalable analysis of RNA-seq splicing and coverage
A Nellore, L Collado-Torres, AE Jaffe, J Alquicira-Hernández, C Wilks, ...
Bioinformatics 33 (24), 4033-4040, 2017
812017
ascend: R package for analysis of single-cell RNA-seq data
A Senabouth, SW Lukowski, JA Hernandez, SB Andersen, X Mei, ...
GigaScience 8 (8), giz087, 2019
482019
DevKidCC allows for robust classification and direct comparisons of kidney organoid datasets
SB Wilson, SE Howden, JM Vanslambrouck, A Dorison, ...
Genome Medicine 14 (1), 19, 2022
332022
Mapping the dynamic genetic regulatory architecture of HLA genes at single-cell resolution
JB Kang, AZ Shen, S Gurajala, A Nathan, L Rumker, VRC Aguiar, ...
Nature genetics 55 (12), 2255-2268, 2023
242023
Tracking the clonal dynamics of SARS-CoV-2-specific T cells in children and adults with mild/asymptomatic COVID-19
WH Khoo, K Jackson, C Phetsouphanh, JJ Zaunders, ...
Clinical Immunology 246, 109209, 2023
212023
Single-cell eQTL mapping identifies cell type–specific genetic control of autoimmune disease. Science 376, eabf3041
S Yazar, J Alquicira-Hernandez, K Wing, A Senabouth, MG Gordon, ...
162022
No evidence that plasmablasts transdifferentiate into developing neutrophils in severe COVID‐19 disease
J Alquicira‐Hernandez, JE Powell, TG Phan
Clinical & Translational Immunology 10 (7), e1308, 2021
132021
Single-cell RNA-sequencing reveals widespread personalized, context-specific gene expression regulation in immune cells
R Oelen, DH de Vries, H Brugge, G Gordon, M Vochteloo, ...
bioRxiv, 2021.06. 04.447088, 2021
72021
Programmatic access to bacterial regulatory networks with regutools
J Chávez, C Barberena-Jonas, JE Sotelo-Fonseca, ...
Bioinformatics 36 (16), 4532-4534, 2020
52020
Identifying genetic variants that influence the abundance of cell states in single-cell data
L Rumker, S Sakaue, Y Reshef, JB Kang, S Yazar, J Alquicira-Hernandez, ...
Nature Genetics 56 (10), 2068-2077, 2024
12024
Genetic variants associated with cell-type-specific intra-individual gene expression variability reveal new mechanisms of genome regulation
A Xue, S Yazar, J Alquicira-Hernández, ASE Cuomo, A Senabouth, ...
bioRxiv, 2024.05. 05.592598, 2024
12024
Single-cell atlas of the human immune system reveals sex-specific dynamics of immunosenescence
M Sopena-Rios, A Ripoll-Cladellas, F Omidi, S Ballouz, ...
Available at SSRN 5021328, 2024
12024
Protein Translation Dysregulation and Immune Cell Evasion Define Metastatic Clones in HPV-related Cancer of the Oropharynx
VT Chin, W Muskovic, RA McCloy, DR Neavin, J Alquicira-Hernandez, ...
bioRxiv, 2024.04. 15.589624, 2024
2024
Single-cell atlas of the human immune system reveals sex-specific dynamics of immunosenescence
MS Rios, A Ripoll-Cladellas, F Omidi, S Ballouz, J Alquicira-Hernandez, ...
bioRxiv, 2024.11. 06.622096, 2024
2024
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