| Altered proteome of extracellular vesicles derived from bladder cancer patients urine J Lee, KQ McKinney, AJ Pavlopoulos, M Niu, JW Kang, JW Oh, KP Kim, ... Molecules and cells 41 (3), 179-187, 2018 | 65 | 2018 |
| Methamphetamine Increases the Proportion of SIV-Infected Microglia/Macrophages, Alters Metabolic Pathways, and Elevates Cell Death Pathways: A Single-Cell Analysis M Niu, B Morsey, BG Lamberty, K Emanuel, F Yu, R León-Rivera, ... Viruses 12 (11), 1297, 2020 | 36 | 2020 |
| Interactions of Monocytes, HIV, and ART Identified by an Innovative scRNAseq Pipeline: Pathways to Reservoirs and HIV-Associated Comorbidities R León-Rivera, B Morsey, M Niu, HS Fox, JW Berman mBio 11 (e01037), 20, 2020 | 26 | 2020 |
| Downregulation of an Evolutionary Young miR‐1290 in an iPSC‐Derived Neural Stem Cell Model of Autism Spectrum Disorder D Moore, BM Meays, LSV Madduri, F Shahjin, S Chand, M Niu, ... Stem Cells International 2019 (1), 8710180, 2019 | 24 | 2019 |
| High-throughput analysis of lung immune cells in a combined murine model of agriculture dust-triggered airway inflammation with rheumatoid arthritis R Gaurav, TR Mikuls, GM Thiele, AJ Nelson, M Niu, C Guda, JD Eudy, ... PloS one 16 (2), e0240707, 2021 | 21 | 2021 |
| Towards a map of cis-regulatory sequences in the human genome M Niu, E Tabari, P Ni, Z Su Nucleic acids research 46 (11), 5395-5409, 2018 | 21 | 2018 |
| A method of gene-function annotation based on variable precision rough sets Z Pei, X Shi, M Niu, X Tang, L Liu, Y Kong, Y Liang Journal of bionic engineering 4 (3), 177-184, 2007 | 19 | 2007 |
| MotifClick: prediction of cis-regulatory binding sites via merging cliques S Zhang, S Li, M Niu, PT Pham, Z Su BMC bioinformatics 12, 1-13, 2011 | 17 | 2011 |
| Cryopreservation of microglia enables single-cell RNA sequencing with minimal effects on disease-related gene expression patterns B Morsey, M Niu, SR Dyavar, CV Fletcher, BG Lamberty, K Emanuel, ... IScience 24 (4), 2021 | 16 | 2021 |
| Identification of prognostic markers in cholangiocarcinoma using altered DNA methylation and gene expression profiles NK Mishra, M Niu, S Southekal, P Bajpai, A Elkholy, U Manne, C Guda Frontiers in genetics 11, 1290, 2020 | 15 | 2020 |
| De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets M Niu, ES Tabari, Z Su BMC genomics 15, 1-20, 2014 | 14 | 2014 |
| Morphine suppresses peripheral responses and transforms brain myeloid gene expression to favor neuropathogenesis in SIV infection HS Fox, M Niu, BM Morsey, BG Lamberty, K Emanuel, P Periyasamy, ... Frontiers in immunology 13, 1012884, 2022 | 11 | 2022 |
| Antiretroviral therapy restores the homeostatic state of microglia in SIV-infected rhesus macaques AJ Trease, M Niu, B Morsey, C Guda, SN Byrareddy, S Buch, HS Fox Journal of Leukocyte Biology 112 (5), 969-981, 2022 | 9 | 2022 |
| Mapping developmental trajectories and subtype diversity of normal and glaucomatous human retinal ganglion cells by single‐cell transcriptome analysis P Teotia, M Niu, I Ahmad STEM CELLS 38 (10), 1279-1291, 2020 | 8 | 2020 |
| Microglia and macrophages alterations in the CNS during acute SIV infection: a single-cell analysis in rhesus macaques X Xu, M Niu, BG Lamberty, K Emanuel, S Ramachandran, AJ Trease, ... PLoS pathogens 20 (9), e1012168, 2024 | 6 | 2024 |
| IFN-γ transforms the transcriptomic landscape and triggers myeloid cell hyperresponsiveness to cause lethal lung injury AK Verma, M McKelvey, MB Uddin, S Palani, M Niu, C Bauer, S Shao, ... Frontiers in immunology 13, 1011132, 2022 | 6 | 2022 |
| HIV Infection Drives Foam Cell Formation via NLRP3 Inflammasome Activation M Caocci, M Niu, HS Fox, TH Burdo International Journal of Molecular Sciences 25 (4), 2367, 2024 | 5 | 2024 |
| Critical contributions of protein cargos to the functions of macrophage-derived extracellular vesicles B Liu, PL Nguyen, H Yu, X Li, H Wang, J Price, M Niu, C Guda, X Cheng, ... Journal of Nanobiotechnology 21 (1), 352, 2023 | 4 | 2023 |
| The single-cell opioid responses in the context of HIV (SCORCH) consortium SA Ament, RR Campbell, MK Lobo, JP Receveur, K Agrawal, A Borjabad, ... Molecular Psychiatry, 1-12, 2024 | 3 | 2024 |
| Antiretroviral therapy ameliorates SIV-associated myocarditis by dampening interferon signaling and pathogen response in the heart. JA Robinson, M Niu, HS Fox, TH Burdo The Journal of Infectious Diseases, jiad105-jiad105, 2023 | 1 | 2023 |
