Παρακολούθηση
Benno Schwikowski
Benno Schwikowski
Head, Computational Systems Biomedicine Lab, Pasteur Institute, Paris
Η διεύθυνση ηλεκτρονικού ταχυδρομείου έχει επαληθευτεί στον τομέα pasteur.fr - Αρχική σελίδα
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Cytoscape: a software environment for integrated models of biomolecular interaction networks
P Shannon, A Markiel, O Ozier, NS Baliga, JT Wang, D Ramage, N Amin, ...
Genome research 13 (11), 2498-2504, 2003
458782003
Integration of biological networks and gene expression data using Cytoscape
MS Cline, M Smoot, E Cerami, A Kuchinsky, N Landys, C Workman, ...
Nature protocols 2 (10), 2366-2382, 2007
28262007
A network of protein–protein interactions in yeast
B Schwikowski, P Uetz, S Fields
Nature biotechnology 18 (12), 1257-1261, 2000
17902000
Discovering regulatory and signalling circuits in molecular interaction networks
T Ideker, O Ozier, B Schwikowski, AF Siegel
Bioinformatics 18 (suppl_1), S233-S240, 2002
14892002
Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis
P Nicolas, U Mäder, E Dervyn, T Rochat, A Leduc, N Pigeonneau, ...
Science 335 (6072), 1103-1106, 2012
10332012
Graph-based methods for analysing networks in cell biology
T Aittokallio, B Schwikowski
Briefings in bioinformatics 7 (3), 243-255, 2006
6062006
Autoantibodies neutralizing type I IFNs are present in~ 4% of uninfected individuals over 70 years old and account for~ 20% of COVID-19 deaths
P Bastard, A Gervais, T Le Voyer, J Rosain, Q Philippot, J Manry, ...
Science immunology 6 (62), eabl4340, 2021
5422021
Host-viral infection maps reveal signatures of severe COVID-19 patients
P Bost, A Giladi, Y Liu, Y Bendjelal, G Xu, E David, R Blecher-Gonen, ...
Cell 181 (7), 1475-1488. e12, 2020
5072020
Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism
JM Buescher, W Liebermeister, M Jules, M Uhr, J Muntel, E Botella, ...
Science 335 (6072), 1099-1103, 2012
3332012
ProbID: a probabilistic algorithm to identify peptides through sequence database searching using tandem mass spectral data
N Zhang, R Aebersold, B Schwikowski
Proteomics 2 (10), 1406-1412, 2002
3082002
Functional analysis via standardized whole-blood stimulation systems defines the boundaries of a healthy immune response to complex stimuli
D Duffy, V Rouilly, V Libri, M Hasan, B Beitz, M David, A Urrutia, A Bisiaux, ...
Immunity 40 (3), 436-450, 2014
2522014
Algorithms for phylogenetic footprinting
M Blanchette
Proceedings of the fifth annual international conference on Computational …, 2001
2442001
Distinctive roles of age, sex, and genetics in shaping transcriptional variation of human immune responses to microbial challenges
B Piasecka, D Duffy, A Urrutia, H Quach, E Patin, C Posseme, J Bergstedt, ...
Proceedings of the National Academy of Sciences 115 (3), E488-E497, 2018
2262018
From the exposome to mechanistic understanding of chemical-induced adverse effects
BI Escher, J Hackermüller, T Polte, S Scholz, A Aigner, R Altenburger, ...
Environment international 99, 97-106, 2017
2062017
The risk of COVID-19 death is much greater and age dependent with type I IFN autoantibodies
J Manry, P Bastard, A Gervais, T Le Voyer, J Rosain, Q Philippot, ...
Proceedings of the National Academy of Sciences 119 (21), 2022
1642022
A shared disease-associated oligodendrocyte signature among multiple CNS pathologies
M Kenigsbuch, P Bost, S Halevi, Y Chang, S Chen, Q Ma, R Hajbi, ...
Nature neuroscience 25 (7), 876-886, 2022
1572022
A software environment for integrated models of biomolecular interaction networks., 2003, 13
P Shannon, A Markiel, O Ozier, NS Baliga, JT Wang, D Ramage, N Amin, ...
DOI: https://doi. org/10.1101/gr 1239303, 2498-2504, 0
148
Signal maps for mass spectrometry-based comparative proteomics
A Prakash, P Mallick, J Whiteaker, H Zhang, A Paulovich, M Flory, H Lee, ...
Molecular & Cellular Proteomics 5 (3), 423-432, 2006
1452006
Bystander IFN-γ activity promotes widespread and sustained cytokine signaling altering the tumor microenvironment
R Thibaut, P Bost, I Milo, M Cazaux, F Lemaître, Z Garcia, I Amit, B Breart, ...
Nature cancer 1 (3), 302-314, 2020
1442020
GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring
O Garcia, C Saveanu, M Cline, M Fromont-Racine, A Jacquier, ...
Bioinformatics 23 (3), 394-396, 2007
1362007
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