Integrative analysis of multimodal mass spectrometry data in MZmine 3 R Schmid, S Heuckeroth, A Korf, A Smirnov, O Myers, TS Dyrlund, ... Nature biotechnology 41 (4), 447-449, 2023 | 464 | 2023 |
Learning to design protein-protein interactions with enhanced generalization A Bushuiev, R Bushuiev, A Filkin, P Kouba, M Gabrielova, M Gabriel, ... ICLR 2024 (The Twelfth International Conference on Learning Representations), 2023 | 13 | 2023 |
Emergence of molecular structures from repository-scale self-supervised learning on tandem mass spectra R Bushuiev, A Bushuiev, R Samusevich, C Brungs, J Sivic, T Pluskal | 6* | 2024 |
Integrative Analysis of Multimodal Mass Spectrometry Data in MZmine 3., 2023, 41 R Schmid, S Heuckeroth, A Korf, A Smirnov, O Myers, TS Dyrlund, ... DOI: https://doi. org/10.1038/s41587-023-01690-2. PMID: https://www. ncbi …, 0 | 5 | |
Highly accurate discovery of terpene synthases powered by machine learning reveals functional terpene cyclization in Archaea R Samusevich, T Hebra, R Bushuiev, A Bushuiev, T Čalounová, ... bioRxiv, 2024.01. 29.577750, 2024 | 4* | 2024 |
MassSpecGym: A benchmark for the discovery and identification of molecules R Bushuiev, A Bushuiev, NF de Jonge, A Young, F Kretschmer, ... NeurIPS 2024 (The Thirty-Eighth Annual Conference on Neural Information …, 2024 | 1 | 2024 |
Revealing data leakage in protein interaction benchmarks A Bushuiev, R Bushuiev, J Sedlar, T Pluskal, J Damborsky, S Mazurenko, ... ICLR 2024 Workshop on Generative and Experimental Perspectives for …, 2024 | 1 | 2024 |
Training on test proteins improves fitness, structure, and function prediction A Bushuiev, R Bushuiev, N Zadorozhny, R Samusevich, H Stärk, J Sedlar, ... arXiv preprint arXiv:2411.02109, 2024 | | 2024 |
Accurate predictions of enzymatic biochemistry as an enabler for generation of de-novo sequences R Samusevich, P Kouba, R Bushuiev, A Bushuiev, J Sivic, T Pluskal ICLR 2024 Workshop on Generative and Experimental Perspectives for …, 0 | | |