| Atomic-resolution structure of HIV-1 capsid tubes by magic-angle spinning NMR M Lu, RW Russell, AJ Bryer, CM Quinn, G Hou, H Zhang, CD Schwieters, ... Nature structural & molecular biology 27 (9), 863-869, 2020 | 63 | 2020 |
| Recognition of the TDP-43 nuclear localization signal by importin α1/β SG Doll, H Meshkin, AJ Bryer, F Li, YH Ko, RK Lokareddy, RE Gillilan, ... Cell reports 39 (13), 2022 | 38 | 2022 |
| Structural basis for the homotypic fusion of chlamydial inclusions by the SNARE-like protein IncA G Cingolani, M McCauley, A Lobley, AJ Bryer, J Wesolowski, DL Greco, ... Nature communications 10 (1), 2747, 2019 | 31 | 2019 |
| Molecular dynamics of the viral life cycle: progress and prospects PE Jones, C Pérez-Segura, AJ Bryer, JR Perilla, JA Hadden-Perilla Current opinion in virology 50, 128-138, 2021 | 29 | 2021 |
| Full scale structural, mechanical and dynamical properties of HIV-1 liposomes AJ Bryer, T Reddy, E Lyman, JR Perilla PLOS Computational Biology 18 (1), e1009781, 2022 | 15 | 2022 |
| Deep-learning in situ classification of HIV-1 virion morphology JS Rey, W Li, AJ Bryer, H Beatson, C Lantz, AN Engelman, JR Perilla Computational and structural biotechnology journal 19, 5688-5700, 2021 | 12 | 2021 |
| Multidisciplinary studies with mutated HIV-1 capsid proteins reveal structural mechanisms of lattice stabilization AT Gres, KA Kirby, WM McFadden, H Du, D Liu, C Xu, AJ Bryer, JR Perilla, ... Nature Communications 14 (1), 5614, 2023 | 10 | 2023 |
| Performance efficient macromolecular mechanics via sub-nanometer shape based coarse graining AJ Bryer, JS Rey, JR Perilla Nature Communications 14 (1), 2014, 2023 | 10 | 2023 |
| High-performance analysis of biomolecular containers to measure small-molecule transport, transbilayer lipid diffusion, and protein cavities AJ Bryer, JA Hadden-Perilla, JE Stone, JR Perilla Journal of chemical information and modeling 59 (10), 4328-4338, 2019 | 10 | 2019 |
| Curvature of the retroviral capsid assembly is modulated by a molecular switch T Thames, AJ Bryer, X Qiao, J Jeon, R Weed, K Janicki, B Hu, PL Gor’kov, ... The journal of physical chemistry letters 12 (32), 7768-7776, 2021 | 9 | 2021 |
| Elasticity of the HIV-1 core facilitates nuclear entry and infection A Deshpande, AJ Bryer, JR Andino-Moncada, J Shi, J Hong, C Torres, ... PLoS Pathogens 20 (9), e1012537, 2024 | 6 | 2024 |
| Accelerating prediction of chemical shift of protein structures on GPUs: Using OpenACC E Wright, MH Ferrato, AJ Bryer, R Searles, JR Perilla, S Chandrasekaran PLoS computational biology 16 (5), e1007877, 2020 | 4 | 2020 |
| GPU accelerated computation of isotropic chemical shifts offers new dimension of structure refinement in largescale molecular dynamics simulation AJ Bryer, EF Wright, M Ferrato, T Huber, E Ortiz, R Searles, ... Biophysical Journal 116 (3), 569a-570a, 2019 | 1 | 2019 |
| Probing the Mechanoelastic Mysteries of the HIV-1 Capsid: A Journey Through Theoretical and Computational Biophysics AJ Bryer University of Delaware, 2024 | | 2024 |
| Unsupervised Refinement of Protein Structures AJ Bryer, JS Rey, C Xu, JA Hadden-Perilla, JR Perilla | | 2023 |
| Microtiter binding assays and in silico kinetic mapping reveal binding of TDP-43 nuclear localization signal to importin α is modulated by phosphorylation H Meshkin, AJ Bryer, SG Doll, G Cingolani, JR Perilla Biophysical Journal 121 (3), 41a, 2022 | | 2022 |
| Large scale all-atom molecular dynamics simulations of mutant CA tubes provide insights on cytotoxic T-lymphocyte-mediated HIV-1 restriction AJ Bryer, M Balasubramaniam, S Thapa, BO Davids, C Xu, J Shi, C Aiken, ... Biophysical Journal 121 (3), 321a, 2022 | | 2022 |
| Deep-learning in-situ classification of HIV-1 virion morphology JS Rey, W Li, AJ Bryer, H Beatson, C Lantz, A Engelman, JR Perilla Biophysical Journal 121 (3), 129a-130a, 2022 | | 2022 |
| MD Simulations of Full-Scale HIV-1 Lipid Envelope on LANL Grizzly Supercomputer [Slide] A Bryer, TJE Reddy, E Lyman, JR Perilla Los Alamos National Laboratory (LANL), Los Alamos, NM (United States), 2021 | | 2021 |
| The Pentamer vs Hexamer Assembly of Retroviral Capsid Protein is Controlled by the Flexible Linker B Chen, X Qiao, T Thames, AJ Bryer, J Jeon, I Hung, P Gorkov, Z Gan, ... Biophysical Journal 120 (3), 24a, 2021 | | 2021 |
