MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization K Katoh, J Rozewicki, KD Yamada Briefings in bioinformatics 20 (4), 1160-1166, 2017 | 7421 | 2017 |
MAFFT-DASH: integrated protein sequence and structural alignment J Rozewicki, S Li, KM Amada, DM Standley, K Katoh Nucleic acids research 47 (W1), W5-W10, 2019 | 728 | 2019 |
Repertoire Builder: high-throughput structural modeling of B and T cell receptors D Schritt, S Li, J Rozewicki, K Katoh, K Yamashita, W Volkmuth, G Cavet, ... Molecular Systems Design & Engineering 4 (4), 761-768, 2019 | 74 | 2019 |
Flexible, functional, and familiar: characteristics of SARS-CoV-2 spike protein evolution DS Saputri, S Li, FJ Van Eerden, J Rozewicki, Z Xu, HS Ismanto, A Davila, ... Frontiers in microbiology 11, 2112, 2020 | 45 | 2020 |
Methods for sequence and structural analysis of B and T cell receptor repertoires S Teraguchi, DS Saputri, MA Llamas-Covarrubias, A Davila, D Diez, ... Computational and Structural Biotechnology Journal 18, 2000-2011, 2020 | 32 | 2020 |
AbAdapt: an adaptive approach to predicting antibody–antigen complex structures from sequence A Davila, Z Xu, S Li, J Rozewicki, J Wilamowski, S Kotelnikov, D Kozakov, ... Bioinformatics Advances 2 (1), vbac015, 2022 | 28 | 2022 |
Structural modeling of lymphocyte receptors and their antigens S Li, J Wilamowski, S Teraguchi, FJ van Eerden, J Rozewicki, A Davila, ... In Vitro Differentiation of T-Cells: Methods and Protocols, 207-229, 2019 | 16 | 2019 |
Functional clustering of B cell receptors using sequence and structural features Z Xu, S Li, J Rozewicki, K Yamashita, S Teraguchi, T Inoue, R Shinnakasu, ... Molecular Systems Design & Engineering 4 (4), 769-778, 2019 | 13 | 2019 |
Analysis of protein intermolecular interactions with MAFFT-DASH J Rozewicki, S Li, K Katoh, DM Standley Multiple Sequence Alignment: Methods and Protocols, 163-177, 2021 | 1 | 2021 |