Umberto Perron

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Citations	179	150
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Francesco IorioHuman TechnopoleVerified email at fht.org
Nick GoldmanEMBL-European Bioinformatics InstituteVerified email at ebi.ac.uk
Alessandro VincetiHuman Technopole FoundationVerified email at fht.org
Emre KarakocPrincipal Bioinformatician, Wellcome Sanger InstituteVerified email at sanger.ac.uk
Ivan MolinerisUniversità di TorinoVerified email at unito.it
Iain MoalGlaxoSmithKlineVerified email at gsk.com
Guy BaeleAssociate Professor, KU LeuvenVerified email at kuleuven.be
Nicola De MaioScientist in Molecular Evolution, European Bioinformatic Institute (EMBL-EBI), CambridgeVerified email at ebi.ac.uk
Stephane GuindonCNRS, Montpellier, FranceVerified email at lirmm.fr
Antanas KalkauskasTech Lead - R&D (Software Engineering), Sensmetry UABVerified email at sensmetry.com
Paolo ProveroProfessor, University of TurinVerified email at unito.it
Mathew GarnettWellcome Sanger InstituteVerified email at sanger.ac.uk
Oleksiy M. KozlovHeidelberg Institute for Theoretical StudiesVerified email at h-its.org
Alexandros StamatakisFoundation for Research and Technology - Hellas, HITS gGmbH, KITVerified email at ics.forth.gr
Claudia C. WeberWellcome Sanger InstituteVerified email at sanger.ac.uk
Ziheng YangRA Fisher Professor of Statistical Genetics, University College LondonVerified email at ucl.ac.uk
Andrea RaiconiConsiglio Nazionale delle Ricerche (CNR)Verified email at cnr.it
Elena GrassiPostDoc in the Translational Cancer Medicine lab, Department of Oncology, University of TurinVerified email at unito.it
Livio TrusolinoProfessor, University of Torino School of Medicine, ItalyVerified email at ircc.it
Manel EstellerDirector, Josep Carreras Leukaemia Research Institute. University of Barcelona and ICREAVerified email at carrerasresearch.org

Umberto Perron

Senior Computational Biologist at Omniscope

Verified email at omniscope.ai

computational biology molecular evolution immuno-oncology


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Sampling bias and model choice in continuous phylogeography: Getting lost on a random walk A Kalkauskas, U Perron, Y Sun, N Goldman, G Baele, S Guindon, ... PLOS Computational Biology 17 (1), e1008561, 2021	70	2021
In silico prediction of lncRNA function using tissue specific and evolutionary conserved expression U Perron, P Provero, I Molineris BMC bioinformatics 18, 29-39, 2017	51	2017
CoRe: a robustly benchmarked R package for identifying core-fitness genes in genome-wide pooled CRISPR-Cas9 screens A Vinceti, E Karakoc, C Pacini, U Perron, RR De Lucia, MJ Garnett, F Iorio BMC genomics 22, 1-16, 2021	21	2021
Modeling structural constraints on protein evolution via side-chain conformational states U Perron, AM Kozlov, A Stamatakis, N Goldman, IH Moal Molecular biology and evolution 36 (9), 2086-2103, 2019	16	2019
Probabilistic models for the study of protein evolution U Perron, IH Moal, JL Thorne, N Goldman Handbook of Statistical Genomics: Two Volume Set, 347-30, 2019	6	2019
Reduced gene templates for supervised analysis of scale-limited CRISPR-Cas9 fitness screens A Vinceti, U Perron, L Trastulla, F Iorio Cell Reports 40 (4), 2022	5	2022
Ambiguity coding allows accurate inference of evolutionary parameters from alignments in an aggregated state-space CC Weber, U Perron, D Casey, Z Yang, N Goldman Systematic Biology 70 (1), 21-32, 2021	4	2021
An interactive web application for processing, correcting, and visualizing genome-wide pooled CRISPR-Cas9 screens A Vinceti, RR De Lucia, P Cremaschi, U Perron, E Karakoc, L Mauri, ... Cell Reports Methods 3 (1), 2023	3	2023
A heuristic algorithm solving the mutual-exclusivity-sorting problem A Vinceti, L Trastulla, U Perron, A Raiconi, F Iorio Bioinformatics 39 (1), btad016, 2023	2	2023
Redefining false discoveries in cancer data analyses H Najgebauer, U Perron, F Iorio Nature Computational Science 1 (1), 22-23, 2021	1	2021
Integrative ensemble modelling of cetuximab sensitivity in colorectal cancer patient-derived xenografts U Perron, E Grassi, A Chatzipli, M Viviani, E Karakoc, L Trastulla, ... Nature Communications 15 (1), 9139, 2024		2024
Integrative ensemble modelling of cetuximab sensitivity in colorectal cancer PDXs U Perron, E Grassi, A Chatzipli, M Viviani, E Karakoc, L Trastulla, C Isella, ... bioRxiv, 2023.01. 24.525314, 2023		2023
CRISPRcleanR^WebApp: an interactive web application for processing genome-wide pooled CRISPR-Cas9 viability screens A Vinceti, RR De Lucia, P Cremaschi, U Perron, E Karacok, L Mauri, ... bioRxiv, 2022.03. 11.483924, 2022		2022
CoRe: A robustly benchmarked R package for the identification of core fitness genes in genome-wide pooled CRISPR knock-out screens A Vinceti, E Karakoc, C Pacini, U Perron, RR De Lucia, MJ Garnett, F Iorio bioRxiv, 2021.05. 25.445610, 2021		2021
The Influence of Structural Constraints on Protein Evolution U Perron		2020
Modelling structural constraints on protein evolution U Perron, AM Kozlov, A Stamatakis, N Goldman, IH Moal

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