| Accurate structure prediction of biomolecular interactions with AlphaFold 3 J Abramson, J Adler, J Dunger, R Evans, T Green, A Pritzel, ... Nature, 1-3, 2024 | 2480 | 2024 |
| CryoDRGN: reconstruction of heterogeneous cryo-EM structures using neural networks ED Zhong, T Bepler, B Berger, JH Davis Nature Methods 18 (2), 176-185, 2021 | 547 | 2021 |
| Learning the language of viral evolution and escape B Hie, ED Zhong, B Berger, B Bryson Science 371 (6526), 284-288, 2021 | 307 | 2021 |
| Lessons learned from comparing molecular dynamics engines on the SAMPL5 dataset MR Shirts, C Klein, JM Swails, J Yin, MK Gilson, DL Mobley, DA Case, ... Journal of computer-aided molecular design 31, 147-161, 2017 | 297 | 2017 |
| Reconstructing continuous distributions of 3D protein structure from cryo-EM images. ED Zhong, T Bepler, JH Davis, B Berger International Conference on Learning Representations (ICLR), 2020 | 132 | 2020 |
| Structures of radial spokes and associated complexes important for ciliary motility M Gui, M Ma, E Sze-Tu, X Wang, F Koh, ED Zhong, B Berger, JH Davis, ... Nature structural & molecular biology, 2020 | 100 | 2020 |
| Explicitly disentangling image content from translation and rotation with spatial-VAE T Bepler, E Zhong, K Kelley, E Brignole, B Berger Advances in Neural Information Processing Systems, 15435-15445, 2019 | 100 | 2019 |
| CryoDRGN2: Ab Initio Neural Reconstruction of 3D Protein Structures From Real Cryo-EM Images ED Zhong, A Lerer, JH Davis, B Berger Proceedings of the IEEE/CVF International Conference on Computer Vision …, 2021 | 81 | 2021 |
| Uncovering structural ensembles from single-particle cryo-EM data using cryoDRGN LF Kinman, BM Powell, ED Zhong, B Berger, JH Davis Nature Protocols 18 (2), 319-339, 2023 | 58 | 2023 |
| RNA timestamps identify the age of single molecules in RNA sequencing SG Rodriques, LM Chen, S Liu, ED Zhong, JR Scherrer, ES Boyden, ... Nature Biotechnology, 1-6, 2020 | 53 | 2020 |
| Areas of permanent shadow in Mercury's south polar region ascertained by MESSENGER orbital imaging NL Chabot, CM Ernst, BW Denevi, JK Harmon, SL Murchie, DT Blewett, ... Geophysical Research Letters 39 (9), 2012 | 50 | 2012 |
| Amortized Inference for Heterogeneous Reconstruction in Cryo-EM A Levy, G Wetzstein, JNP Martel, F Poitevin, E Zhong Advances in Neural Information Processing Systems 35, 13038-13049, 2022 | 37 | 2022 |
| Deep generative modeling for volume reconstruction in cryo-electron microscopy C Donnat, A Levy, F Poitevin, ED Zhong, N Miolane Journal of structural biology 214 (4), 107920, 2022 | 37 | 2022 |
| Conformational heterogeneity and probability distributions from single-particle cryo-electron microscopy WS Tang, ED Zhong, SM Hanson, EH Thiede, P Cossio Current Opinion in Structural Biology 81, 102626, 2023 | 33 | 2023 |
| Exploring generative atomic models in cryo-EM reconstruction ED Zhong, A Lerer, JH Davis, B Berger arXiv preprint arXiv:2107.01331, 2021 | 21 | 2021 |
| Latent Space Diffusion Models of Cryo-EM Structures K Kreis, T Dockhorn, Z Li, E Zhong arXiv preprint arXiv:2211.14169, 2022 | 19 | 2022 |
| Thermodynamics of coupled protein adsorption and stability using hybrid Monte Carlo simulations ED Zhong, MR Shirts Langmuir 30 (17), 4952-4961, 2014 | 12 | 2014 |
| Deep reconstructing generative networks for visualizing dynamic biomolecules inside cells R Rangan, S Khavnekar, A Lerer, J Johnston, R Kelley, M Obr, A Kotecha, ... bioRxiv, 2023.08. 18.553799, 2023 | 10 | 2023 |
| Cryo-EM structure of the plant 26S proteasome S Kandolf, I Grishkovskaya, K Belačić, DL Bolhuis, S Amann, B Foster, ... Plant Communications 3 (3), 2022 | 9 | 2022 |
| CryoDRGN-ET: deep reconstructing generative networks for visualizing dynamic biomolecules inside cells R Rangan, R Feathers, S Khavnekar, A Lerer, JD Johnston, R Kelley, ... Nature Methods 21 (8), 1537-1545, 2024 | 7 | 2024 |