| Machine learning-guided protein engineering P Kouba, P Kohout, F Haddadi, A Bushuiev, R Samusevich, J Sedlar, ... ACS catalysis 13 (21), 13863-13895, 2023 | 73 | 2023 |
| Learning to design protein-protein interactions with enhanced generalization A Bushuiev, R Bushuiev, P Kouba, A Filkin, M Gabrielova, M Gabriel, ... ICLR 2024 (The Twelfth International Conference on Learning Representations), 2023 | 13 | 2023 |
| Emergence of molecular structures from repository-scale self-supervised learning on tandem mass spectra R Bushuiev, A Bushuiev, R Samusevich, C Brungs, J Sivic, T Pluskal | 6* | 2024 |
| Discovery and Characterization of Terpene Synthases Powered by Machine Learning R Samusevich, T Hebra, R Bushuiev, A Bushuiev, R Chatpatanasiri, ... | 3 | 2024 |
| MassSpecGym: A benchmark for the discovery and identification of molecules R Bushuiev, A Bushuiev, NF de Jonge, A Young, F Kretschmer, ... NeurIPS 2024 (The Thirty-Eighth Annual Conference on Neural Information …, 2024 | 1 | 2024 |
| Revealing data leakage in protein interaction benchmarks A Bushuiev, R Bushuiev, J Sedlar, T Pluskal, J Damborsky, S Mazurenko, ... ICLR 2024 Workshop on Generative and Experimental Perspectives for …, 2024 | 1 | 2024 |
| Highly accurate discovery of terpene synthases powered by machine learning reveals functional terpene cyclization in Archaea R Samusevich, T Hebra, R Bushuiev, A Bushuiev, T Čalounová, ... bioRxiv, 2024.01. 29.577750, 2024 | 1 | 2024 |
| Training on test proteins improves fitness, structure, and function prediction A Bushuiev, R Bushuiev, N Zadorozhny, R Samusevich, H Stärk, J Sedlar, ... arXiv preprint arXiv:2411.02109, 2024 | | 2024 |
| ENGINEERING NON-IMMUNOGENIC STAPHYLOKINASE VARIANTS WITH IMPROVED THROMBOLYSIS FOR ACUTE ISCHEMIC STROKE V Slonkova, M Toul, J Mican, A Strunga, L Kasiarova, D Nikitin, ... INTERNATIONAL JOURNAL OF STROKE 18 (3), 351-351, 2023 | | 2023 |
| Supporting Information Machine Learning-Guided Protein Engineering P Kouba, P Kohout, F Haddadi, A Bushuiev, R Samusevich, J Sedlar, ... | | |
| Accurate predictions of enzymatic biochemistry as an enabler for generation of de-novo sequences R Samusevich, P Kouba, R Bushuiev, A Bushuiev, J Sivic, T Pluskal ICLR 2024 Workshop on Generative and Experimental Perspectives for …, 0 | | |
Josef SivicCzech Technical University, CIIRC, ELLIS Unit PragueVerified email at cvut.cz