| A genomic catalog of Earth’s microbiomes S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ... Nature biotechnology 39 (4), 499-509, 2021 | 719 | 2021 |
| Pilot plant demonstration of stable and efficient high rate biological nutrient removal with low dissolved oxygen conditions NA Keene, SR Reusser, MJ Scarborough, AL Grooms, M Seib, ... Water Research 121, 72-85, 2017 | 119 | 2017 |
| Increasing the economic value of lignocellulosic stillage through medium-chain fatty acid production MJ Scarborough, G Lynch, M Dickson, M McGee, TJ Donohue, ... Biotechnology for biofuels 11, 1-17, 2018 | 112 | 2018 |
| Metatranscriptomic and thermodynamic insights into medium-chain fatty acid production using an anaerobic microbiome MJ Scarborough, CE Lawson, JJ Hamilton, TJ Donohue, DR Noguera mSystems 3 (6), e00221-18, 2018 | 94 | 2018 |
| Fermentation of organic residues to beneficial chemicals: a review of medium-chain fatty acid production P Stamatopoulou, J Malkowski, L Conrado, K Brown, M Scarborough Processes 8 (12), 1571, 2020 | 58 | 2020 |
| Medium-Chain Fatty Acid Synthesis by “Candidatus Weimeria bifida” gen. nov., sp. nov., and “Candidatus Pseudoramibacter fermentans” sp. nov MJ Scarborough, KS Myers, TJ Donohue, DR Noguera Applied and Environmental Microbiology 86 (3), e02242-19, 2020 | 54 | 2020 |
| Combining genome-scale experimental and computational methods to identify essential genes in Rhodobacter sphaeroides BT Burger, S Imam, MJ Scarborough, DR Noguera, TJ Donohue MSystems 2 (3), 10.1128/msystems. 00015-17, 2017 | 46 | 2017 |
| Thousands of small, novel genes predicted in global phage genomes BJ Fremin, AS Bhatt, NC Kyrpides, A Sengupta, A Sczyrba, AM da Silva, ... Cell reports 39 (12), 2022 | 34 | 2022 |
| A supply chain framework for the analysis of the recovery of biogas and fatty acids from organic waste Y Hu, M Scarborough, H Aguirre-Villegas, RA Larson, DR Noguera, ... ACS sustainable chemistry & engineering 6 (5), 6211-6222, 2018 | 34 | 2018 |
| Diagnosing and predicting mixed-culture fermentations with unicellular and guild-based metabolic models MJ Scarborough, JJ Hamilton, EA Erb, TJ Donohue, DR Noguera Msystems 5 (5), 10.1128/msystems. 00755-20, 2020 | 30 | 2020 |
| Microbiomes for sustainable biomanufacturing MJ Scarborough, CE Lawson, AC DeCola, IM Gois Current Opinion in Microbiology 65, 8-14, 2022 | 14 | 2022 |
| Diverse electron carriers drive syntrophic interactions in an enriched anaerobic acetate-oxidizing consortium EA McDaniel, M Scarborough, DG Mulat, X Lin, PS Sampara, HM Olson, ... The ISME journal 17 (12), 2326-2339, 2023 | 13 | 2023 |
| Resilient soils for resilient farms: An integrative approach to assess, promote, and value soil health for small-and medium-size farms DA Neher, JM Harris, CE Horner, MJ Scarborough, AR Badireddy, ... Phytobiomes Journal 6 (3), 201-206, 2022 | 11 | 2022 |
| Organics Recycling Tradeoffs: Biogas Potential and Microplastic Content of Mechanically Depackaged Food Waste KK Porterfield, MJ Scarborough, ED Roy ACS Sustainable Chemistry & Engineering 11 (28), 10422-10429, 2023 | 8 | 2023 |
| Comparison of metagenomes from fermentation of various agroindustrial residues suggests a common model of community organization KS Myers, AT Ingle, KA Walters, NW Fortney, MJ Scarborough, ... Frontiers in Bioengineering and Biotechnology 11, 1197175, 2023 | 6 | 2023 |
| Metagenome-assembled genomes from a microbiome converting xylose to medium-chain carboxylic acids MJ Scarborough, KS Myers, NW Fortney, AT Ingle, TJ Donohue, ... Microbiology Resource Announcements 11 (4), e01151-21, 2022 | 5 | 2022 |
| Microbiome assembly and stability during start-up of a full-scale, two-phase anaerobic digester fed cow manure and mixed organic feedstocks AC DeCola, LC Toppen, KP Brown, A Dadkhah, DM Rizzo, RM Ziels, ... Bioresource Technology 394, 130247, 2024 | 4 | 2024 |
| Metagenome-assembled genomes from a microbiome grown in dairy manure hydrolysate AT Ingle, NW Fortney, KS Myers, KA Walters, MJ Scarborough, ... Microbiology Resource Announcements 11 (8), e00292-22, 2022 | 4 | 2022 |
| Metagenomes and metagenome-assembled genomes from microbiomes metabolizing thin stillage from an ethanol biorefinery NW Fortney, KS Myers, AT Ingle, KA Walters, MJ Scarborough, ... Microbiology Resource Announcements 11 (8), e00290-22, 2022 | 4 | 2022 |
| Metagenomes and metagenome-assembled genomes from microbial communities fermenting ultrafiltered milk permeate KA Walters, KS Myers, H Wang, NW Fortney, AT Ingle, MJ Scarborough, ... Microbiology Resource Announcements 11 (7), e00293-22, 2022 | 4 | 2022 |