| Expanded encyclopaedias of DNA elements in the human and mouse genomes JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ... Nature 583 (7818), 699-710, 2020 | 1512 | 2020 |
| Topologically associating domains are stable units of replication-timing regulation BD Pope, T Ryba, V Dileep, F Yue, W Wu, O Denas, DL Vera, Y Wang, ... Nature 515 (7527), 402-405, 2014 | 980 | 2014 |
| Integrative detection and analysis of structural variation in cancer genomes JR Dixon, J Xu, V Dileep, Y Zhan, F Song, VT Le, GG Yardımcı, ... Nature genetics 50 (10), 1388-1398, 2018 | 358 | 2018 |
| Mouse Rif1 is a key regulator of the replication‐timing programme in mammalian cells D Cornacchia, V Dileep, JP Quivy, R Foti, F Tili, R Santarella‐Mellwig, ... The EMBO journal 31 (18), 3678-3690, 2012 | 279 | 2012 |
| Nuclear architecture organized by Rif1 underpins the replication-timing program R Foti, S Gnan, D Cornacchia, V Dileep, A Bulut-Karslioglu, S Diehl, ... Molecular cell 61 (2), 260-273, 2016 | 196 | 2016 |
| Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program V Dileep, F Ay, J Sima, DL Vera, WS Noble, DM Gilbert Genome research 25 (8), 1104-1113, 2015 | 181 | 2015 |
| Identifying cis elements for spatiotemporal control of mammalian DNA replication J Sima, A Chakraborty, V Dileep, M Michalski, KN Klein, NP Holcomb, ... Cell 176 (4), 816-830. e18, 2019 | 178 | 2019 |
| Mapping the epigenomic and transcriptomic interplay during memory formation and recall in the hippocampal engram ensemble A Marco, HS Meharena, V Dileep, RM Raju, J Davila-Velderrain, ... Nature neuroscience 23 (12), 1606-1617, 2020 | 136 | 2020 |
| An integrative ENCODE resource for cancer genomics J Zhang, D Lee, V Dhiman, P Jiang, J Xu, P McGillivray, H Yang, J Liu, ... Nature communications 11 (1), 3696, 2020 | 133 | 2020 |
| Single-cell replication profiling to measure stochastic variation in mammalian replication timing V Dileep, DM Gilbert Nature communications, 2018 | 107 | 2018 |
| Epigenomic dissection of Alzheimer’s disease pinpoints causal variants and reveals epigenome erosion X Xiong, BT James, CA Boix, YP Park, K Galani, MB Victor, N Sun, L Hou, ... Cell 186 (20), 4422-4437. e21, 2023 | 81 | 2023 |
| Chromatin-interaction compartment switch at developmentally regulated chromosomal domains reveals an unusual principle of chromatin folding S Takebayashi, V Dileep, T Ryba, JH Dennis, DM Gilbert Proceedings of the National Academy of Sciences 109 (31), 12574-12579, 2012 | 76 | 2012 |
| Large-scale chromatin structure–function relationships during the cell cycle and development: insights from replication timing V Dileep, JC Rivera-Mulia, J Sima, DM Gilbert Cold Spring Harbor symposia on quantitative biology 80, 53-63, 2015 | 70 | 2015 |
| Down-syndrome-induced senescence disrupts the nuclear architecture of neural progenitors HS Meharena, A Marco, V Dileep, ER Lockshin, GY Akatsu, J Mullahoo, ... Cell Stem Cell 29 (1), 116-130. e7, 2022 | 66 | 2022 |
| Neuronal DNA double-strand breaks lead to genome structural variations and 3D genome disruption in neurodegeneration V Dileep, CA Boix, H Mathys, A Marco, GM Welch, HS Meharena, A Loon, ... Cell 186 (20), 4404-4421. e20, 2023 | 60 | 2023 |
| Neurons burdened by DNA double-strand breaks incite microglia activation through antiviral-like signaling in neurodegeneration GM Welch, CA Boix, E Schmauch, J Davila-Velderrain, MB Victor, ... Science Advances 8 (39), eabo4662, 2022 | 53 | 2022 |
| Murine esBAF chromatin remodeling complex subunits BAF250a and Brg1 are necessary to maintain and reprogram pluripotency-specific replication timing of select replication domains S Takebayashi, I Lei, T Ryba, T Sasaki, V Dileep, D Battaglia, X Gao, ... Epigenetics & chromatin 6, 1-12, 2013 | 34 | 2013 |
| High-throughput single-cell epigenomic profiling by targeted insertion of promoters (TIP-seq) DA Bartlett, V Dileep, T Handa, Y Ohkawa, H Kimura, S Henikoff, ... Journal of Cell Biology 220 (12), e202103078, 2021 | 31 | 2021 |
| Rapid irreversible transcriptional reprogramming in human stem cells accompanied by discordance between replication timing and chromatin compartment V Dileep, KA Wilson, C Marchal, X Lyu, PA Zhao, B Li, A Poulet, ... Stem cell reports 13 (1), 193-206, 2019 | 31 | 2019 |
| Perspectives on ENCODE F Abascal, R Acosta, NJ Addleman, J Adrian, V Afzal, B Aken, JA Akiyama Nature 583 (7818), 693-699, 2020 | 28 | 2020 |
Tyrone RybaNew College of FloridaVerified email at ncf.edu
