| A critical assessment of gene catalogs for metagenomic analysis S Commichaux, N Shah, J Ghurye, A Stoppel, JA Goodheart, GG Luque, ... Bioinformatics 37 (18), 2848-2857, 2021 | 23 | 2021 |
| Evaluating the accuracy of Listeria monocytogenes assemblies from quasimetagenomic samples using long and short reads S Commichaux, K Javkar, P Ramachandran, N Nagarajan, D Bertrand, ... BMC genomics 22 (1), 389, 2021 | 18 | 2021 |
| Characterization of the microbiota of oyster larvae (Crassostrea virginica) and tank water from an aquaculture system with high and low larval survival rates P Ramachandran, E Reed, S Commichaux, E Strain, A Depaola, S Rikard, ... Genome Announcements 6 (25), 10.1128/genomea. 00597-18, 2018 | 12 | 2018 |
| Current state of and future opportunities for prediction in microbiome research: report from the Mid-Atlantic Microbiome Meet-up in Baltimore on 9 January 2019 E Sakowski, G Uritskiy, R Cooper, M Gomes, MR McLaren, JS Meisel, ... Msystems 4 (5), 10.1128/msystems. 00392-19, 2019 | 10 | 2019 |
| Advancing antimicrobial resistance monitoring in surface waters with metagenomic and quasimetagenomic methods A Ottesen, B Kocurek, P Ramachandran, E Reed, S Commichaux, ... PLoS Water 1 (12), e0000067, 2022 | 8 | 2022 |
| Assessment of plasmids for relating the 2020 Salmonella enterica serovar Newport onion outbreak to farms implicated by the outbreak investigation S Commichaux, H Rand, K Javkar, EK Molloy, JB Pettengill, A Pightling, ... BMC genomics 24 (1), 165, 2023 | 7 | 2023 |
| Microbiota of the hickey run tributary of the Anacostia river R Cagle, P Ramachandran, E Reed, S Commichaux, MK Mammel, ... Microbiology Resource Announcements 8 (12), 10.1128/mra. 00123-19, 2019 | 7 | 2019 |
| taxaTarget: Fast, sensitive, and precise classification of microeukaryotes in metagenomic data S Commichaux, K Javkar, HS Muralidharan, P Ramachandran, A Ottesen, ... Research Square, 2022 | 3 | 2022 |
| Microbiota of the hickey run tributary of the anacostia river. Microbiol Resour Announc 8: e00123-19 R Cagle, P Ramachandran, E Reed, S Commichaux, MK Mammel, ... | 3 | 2019 |
| Genetic relatedness and virulence potential of Salmonella Schwarzengrund strains with or without an IncFIB-IncFIC(FII) fusion plasmid isolated from food and … MA Felix, D Sopovski, S Commichaux, N Yoskowitz, NH Aljahdali, ... Frontiers in Microbiology 15, 1397068, 2024 | 2 | 2024 |
| Paired metagenomic and chemical evaluation of aflatoxin-contaminated dog kibble A Ottesen, B Kocurek, E Reed, S Commichaux, M Mammel, ... Frontiers in Veterinary Science 11, 1374839, 2024 | 2 | 2024 |
| Method Validation and Development for the Metagenomic Exploration of Microbial Communities S Commichaux University of Maryland, College Park, 2022 | 2 | 2022 |
| Characterization of the microbiota of oyster larvae (Crassostrea virginica) and tank water from an aquaculture system with high and low larval survival rates. Genome Announc 6 … P Ramachandran, E Reed, S Commichaux, E Strain, A Depaola, S Rikard, ... | 2 | 2018 |
| Benchmarking short and long read polishing tools for nanopore assemblies: achieving near-perfect genomes for outbreak isolates T Luan, S Commichaux, M Hoffmann, V Jayeola, JH Jang, M Pop, H Rand, ... BMC genomics 25 (1), 679, 2024 | 1 | 2024 |
| Complete genome sequences of 17 Salmonella enterica serovar Schwarzengrund isolates carrying an IncFIB-IncFIC (FII) fusion plasmid D Sopovski, S Commichaux, S Zhao, CJ Grim, SL Foley, BK Khajanchi Microbiology Resource Announcements 13 (2), e01062-23, 2024 | 1 | 2024 |
| Optimizing source tracking of Listeria monocytogenes with quasimetagenomics and integrated long and short read sequencing S Commichaux, K Javkar, P Ramachandran, N Nagarajan, D Bertrand, ... | 1 | 2020 |
| DNA data (genome skims and metabarcodes) paired with chemical data demonstrate utility for retrospective analysis of forage linked to fatal poisoning of cattle D Cook, BJ Kocurek, C Stonecipher, KD Welch, DR Gardner, MK Mammel, ... bioRxiv, 2025.01. 06.631623, 2025 | | 2025 |
| Database size positively correlates with the loss of species-level taxonomic resolution for the 16S rRNA and other prokaryotic marker genes S Commichaux, T Luan, HS Muralidharan, M Pop PLOS Computational Biology 20 (8), e1012343, 2024 | | 2024 |
| Fecal microbiomes of laboratory beagles receiving antiparasitic formulations in an experimental setting A Ottesen, B Kocurek, C Deaver, O Chiesa, R Cohen, E Reed, ... Microbiology Resource Announcements 13 (1), e00860-23, 2024 | | 2024 |
| Paraoxonase and acylated homoserine lactones in urine from patients with urinary tract infections--relationship to microbial diversity by 16S rRNA gene sequencing J Lafleur, JS Meisel, S Commichaux, RL Amdur, M Pop, MW Silby bioRxiv, 2021.06. 10.447923, 2021 | | 2021 |
