| KBase: the United States department of energy systems biology knowledgebase AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ... Nature biotechnology 36 (7), 566-569, 2018 | 1289 | 2018 |
| The DOE systems biology knowledgebase (KBase) AP Arkin, RL Stevens, RW Cottingham, S Maslov, CS Henry, P Dehal, ... BioRxiv, 096354, 2016 | 79 | 2016 |
| Metagenome-assembled genome extraction and analysis from microbiomes using KBase D Chivian, SP Jungbluth, PS Dehal, EM Wood-Charlson, RS Canon, ... Nature Protocols 18 (1), 208-238, 2023 | 49 | 2023 |
| Using KBase to assemble and annotate prokaryotic genomes B Allen, M Drake, N Harris, T Sullivan Current Protocols in Microbiology 46 (1), 1E. 13.1-1E. 13.18, 2017 | 33 | 2017 |
| Exploring the role of ideology in interdisciplinary science education policy B Allen Educational Studies 53 (6), 642-653, 2017 | 12 | 2017 |
| The DOE systems biology knowledgebase (KBase). bioRxiv 096354 AP Arkin, RL Stevens, RW Cottingham, S Maslov, CS Henry, P Dehal, ... | 10 | 2016 |
| Bioinformatic teaching resources–for educators, by educators–using KBase, a free, user-friendly, open source platform EG Dow, EM Wood-Charlson, SJ Biller, T Paustian, A Schirmer, CS Sheik, ... Frontiers in Education 6, 711535, 2021 | 7 | 2021 |
| Application of the metabolic modeling pipeline in KBase to categorize reactions, predict essential genes, and predict pathways in an isolate genome BH Allen, N Gupta, JN Edirisinghe, JP Faria, CS Henry Microbial Systems Biology: Methods and Protocols, 291-320, 2022 | 5 | 2022 |
| Reconstruction and analysis of central metabolism in microbes JN Edirisinghe, JP Faria, NL Harris, BH Allen, CS Henry Metabolic Network Reconstruction and Modeling: Methods and Protocols, 111-129, 2018 | 4 | 2018 |
| Genome extraction from shotgun metagenome sequence data D Chivian, SP Jungbluth, PS Dehal, RS Canon, BH Allen, MM Clark, T Gu, ... US Department of Energy Systems Biology Knowledgebase, 2021 | 2 | 2021 |
| Moab Desert Crust-Sample 4E D Chivian, SP Jungbluth, PS Dehal, E Wood-Charlson, RS Canon, ... US Department of Energy Systems Biology Knowledgebase, 2021 | 1 | 2021 |
| Make the Most Out of Genome Announcements with KBase BH Allen, ML Land, EM Wood-Charlson Oak Ridge National Lab.(ORNL), Oak Ridge, TN (United States); DOE Systems …, 2020 | 1 | 2020 |
| Luteolibacter sp. strain Populi B Allen, M Podar US Department of Energy Systems Biology Knowledgebase, 2024 | | 2024 |
| Publisher Correction: Metagenome-assembled genome extraction and analysis from microbiomes using KBase D Chivian, SP Jungbluth, PS Dehal, EM Wood-Charlson, RS Canon, ... Nature protocols 18 (2), 658, 2023 | | 2023 |
| Bioinformatic Teaching Resources–For Educators, by Educators–KBase, a Free, User-Friendly, Open Source Platform EG Dow, EM Wood-Charlson, SJ Biller, T Paustian, A Schirmer, CS Sheik, ... Original Strategies for Training and Educational Initiatives in Bioinformatics, 2022 | | 2022 |
| Ideology and Interdisciplinary Science Graduate Education Reform BH Allen | | 2014 |
