| GENCODE reference annotation for the human and mouse genomes A Frankish, M Diekhans, AM Ferreira, R Johnson, I Jungreis, J Loveland, ... Nucleic acids research 47 (D1), D766-D773, 2019 | 2955 | 2019 |
| GENCODE 2021 A Frankish, M Diekhans, I Jungreis, J Lagarde, JE Loveland, JM Mudge, ... Nucleic acids research 49 (D1), D916-D923, 2021 | 1055 | 2021 |
| ESpritz: accurate and fast prediction of protein disorder I Walsh, AJM Martin, T Di Domenico, SCE Tosatto Bioinformatics 28 (4), 503-509, 2012 | 544 | 2012 |
| MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins E Potenza, TD Domenico, I Walsh, SCE Tosatto Nucleic acids research 43 (D1), D315-D320, 2015 | 212 | 2015 |
| Comprehensive large-scale assessment of intrinsic protein disorder I Walsh, M Giollo, T Di Domenico, C Ferrari, O Zimmermann, SCE Tosatto Bioinformatics 31 (2), 201-208, 2015 | 167 | 2015 |
| CDK4/6 inhibitors impair recovery from cytotoxic chemotherapy in pancreatic adenocarcinoma B Salvador-Barbero, M Álvarez-Fernández, E Zapatero-Solana, ... Cancer cell 37 (3), 340-353. e6, 2020 | 162 | 2020 |
| MobiDB: a comprehensive database of intrinsic protein disorder annotations T Di Domenico, I Walsh, AJM Martin, SCE Tosatto Bioinformatics 28 (15), 2080-2081, 2012 | 161 | 2012 |
| RING: networking interacting residues, evolutionary information and energetics in protein structures AJM Martin, M Vidotto, F Boscariol, T Di Domenico, I Walsh, SCE Tosatto Bioinformatics 27 (14), 2003-2005, 2011 | 147 | 2011 |
| APPRIS 2017: principal isoforms for multiple gene sets JM Rodriguez, J Rodriguez-Rivas, T Di Domenico, J Vázquez, A Valencia, ... Nucleic acids research 46 (D1), D213-D217, 2018 | 143 | 2018 |
| CSpritz: accurate prediction of protein disorder segments with annotation for homology, secondary structure and linear motifs I Walsh, AJM Martin, T Di Domenico, A Vullo, G Pollastri, SCE Tosatto Nucleic acids research 39 (suppl_2), W190-W196, 2011 | 112 | 2011 |
| Terminal uridylyltransferases target RNA viruses as part of the innate immune system J Le Pen, H Jiang, T Di Domenico, E Kneuss, J Kosałka, C Leung, ... Nature structural & molecular biology 25 (9), 778-786, 2018 | 94 | 2018 |
| Networks of high mutual information define the structural proximity of catalytic sites: implications for catalytic residue identification C Marino Buslje, E Teppa, T Di Doménico, JM Delfino, M Nielsen PLoS computational biology 6 (11), e1000978, 2010 | 88 | 2010 |
| An analysis of tissue-specific alternative splicing at the protein level JM Rodriguez, F Pozo, T Di Domenico, J Vazquez, ML Tress PLoS Computational Biology 16 (10), e1008287, 2020 | 77 | 2020 |
| RepeatsDB: a database of tandem repeat protein structures T Di Domenico, E Potenza, I Walsh, R Gonzalo Parra, M Giollo, ... Nucleic acids research 42 (D1), D352-D357, 2014 | 76 | 2014 |
| The helicase aquarius/EMB-4 is required to overcome intronic barriers to allow nuclear RNAi pathways to heritably silence transcription A Akay, T Di Domenico, KM Suen, A Nabih, GE Parada, M Larance, ... Developmental cell 42 (3), 241-255. e6, 2017 | 71 | 2017 |
| Beyondcell: targeting cancer therapeutic heterogeneity in single-cell RNA-seq data C Fustero-Torre, MJ Jiménez-Santos, S García-Martín, C Carretero-Puche, ... Genome Medicine 13 (1), 187, 2021 | 53 | 2021 |
| Association between BRCA2 alterations and intraductal and cribriform histologies in prostate cancer R Lozano, DC Salles, S Sandhu, IM Aragón, H Thorne, F López-Campos, ... European Journal of Cancer 147, 74-83, 2021 | 52 | 2021 |
| APPRIS: selecting functionally important isoforms JM Rodriguez, F Pozo, D Cerdán-Vélez, T Di Domenico, J Vázquez, ... Nucleic acids research 50 (D1), D54-D59, 2022 | 46 | 2022 |
| METTL1 promotes tumorigenesis through tRNA-derived fragment biogenesis in prostate cancer R García-Vílchez, AM Añazco-Guenkova, S Dietmann, J López, ... Molecular cancer 22 (1), 119, 2023 | 43 | 2023 |
| RAPHAEL: recognition, periodicity and insertion assignment of solenoid protein structures I Walsh, FG Sirocco, G Minervini, T Di Domenico, C Ferrari, SCE Tosatto Bioinformatics 28 (24), 3257-3264, 2012 | 40 | 2012 |