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| MetaCompare 2.0: Differential ranking of ecological and human health resistome risks MA Rumi, M Oh, BC Davis, CL Brown, A Juvekar, PJ Vikesland, A Pruden, ... FEMS Microbiology Ecology 100 (12), fiae155, 2024 | 3 | 2024 |
| Metagenomics disentangles epidemiological and microbial ecological associations between community antibiotic use and antibiotic resistance indicators measured in sewage CL Brown, MA Rumi, L McDaniel, A Maile-Moskowitz, J Sein, L Nguyen, ... medRxiv, 2024.12. 11.24318846, 2024 | 1 | 2024 |
| ARGfore: A multivariate framework for forecasting antibiotic resistance gene abundances using time-series metagenomic datasets JM Choi, MA Rumi, P Vikesland, A Pruden, L Zhang bioRxiv, 2025.01. 13.632008, 2025 | | 2025 |
| Can Wastewater-based Surveillance Relate Antimicrobial Use to Resistance Patterns? Metagenomic Analysis of Two Neighboring Treatment Plants P Vikesland, A Maile-Moskowitz, C Brown, M Rumi, N Moumi, H Majeed, ... | | 2024 |
| CIWARS: a web server for waterborne antibiotic resistance surveillance using longitudinal metagenomic data MI Emon, YF Cheung, J Stoll, MA Rumi, C Brown, JM Choi, NA Moumi, ... bioRxiv, 2024.10. 30.621203, 2024 | | 2024 |
| Ciwars: A Web Server for Antibiotic Resistance Surveillance Using Longitudinal Metagenomic Data MI Emon, YF Cheung, J Stoll, MA Rumi, C Brown, JM Choi, NA Moumi, ... | | |