| Genomic epidemiology of the early stages of the SARS-CoV-2 outbreak in Russia AB Komissarov, KR Safina, SK Garushyants, AV Fadeev, MV Sergeeva, ... Nature communications 12 (1), 649, 2021 | 86 | 2021 |
| SARS-CoV-2 escape from cytotoxic T cells during long-term COVID-19 OV Stanevich, EI Alekseeva, M Sergeeva, AV Fadeev, KS Komissarova, ... Nature Communications 14 (1), 149, 2023 | 52 | 2023 |
| Emergence of Y453F and Δ69-70HV mutations in a lymphoma patient with long-term COVID-19 G Bazykin, O Stanevich, D Danilenko, A Fadeev, K Komissarova, ... Virological. org, 2021 | 39* | 2021 |
| The rise and spread of the SARS-CoV-2 AY. 122 lineage in Russia GV Klink, KR Safina, E Nabieva, N Shvyrev, S Garushyants, E Alekseeva, ... Virus Evolution 8 (1), veac017, 2022 | 32 | 2022 |
| Spread of endemic SARS-CoV-2 lineages in Russia before April 2021 GV Klink, KR Safina, SK Garushyants, M Moldovan, E Nabieva, ... Plos one 17 (7), e0270717, 2022 | 26* | 2022 |
| Genomic epidemiology of SARS-CoV-2 in Russia reveals recurring cross-border transmission throughout 2020 A Matsvay, GV Klink, KR Safina, E Nabieva, SK Garushyants, D Biba, ... Plos one 18 (5), e0285664, 2023 | 14 | 2023 |
| Allele-specific nonstationarity in evolution of influenza A virus surface proteins AV Popova, KR Safina, VV Ptushenko, AV Stolyarova, AV Favorov, ... Proceedings of the National Academy of Sciences 116 (42), 21104-21112, 2019 | 12 | 2019 |
| Compensatory Evolution of Intrinsic Transcription Terminators in Bacillus Cereus KR Safina, AA Mironov, GA Bazykin Genome Biology and Evolution 9 (2), 340-349, 2017 | 5 | 2017 |
| New frameworks for hematopoiesis derived from single-cell genomics K Safina, P van Galen Blood 144 (10), 1039-1047, 2024 | 3 | 2024 |
| Molecular epidemiology of HIV-1 in Oryol oblast, Russia KR Safina, Y Sidorina, N Efendieva, E Belonosova, D Saleeva, ... Virus Evolution 8 (1), veac044, 2022 | 2 | 2022 |
| Post-Transplant T Cell Clonotype Diversity Is Associated with Survival in Patients with TP53-Mutated Acute Myeloid Leukemia N Sariipek, KR Safina, C Cutler, VT Ho, J Koreth, C Lindsley, MR Luskin, ... Blood 142, 2176, 2023 | 1 | 2023 |
| Genetics of Adaptation of the Ascomycetous Fungus Podospora anserina to Submerged Cultivation OA Kudryavtseva, KR Safina, OA Vakhrusheva, MD Logacheva, AA Penin, ... Genome biology and evolution 11 (10), 2807-2817, 2019 | 1 | 2019 |
| Protocol for mitochondrial variant enrichment from single-cell RNA sequencing using MAESTER JD Good, KR Safina, TE Miller, P van Galen STAR Protocols 6 (1), 103564, 2025 | | 2025 |
| 2008–EARLY POST-TRANSPLANT IMMUNE DYNAMICS PREDICT RELAPSE RISK IN PATIENTS WITH TP53-MUTATED ACUTE MYELOID LEUKEMIA N Sariipek, K Safina, S Li, W Lu, C Cutler, K Livak, J Garcia, C Lindsley, ... Experimental Hematology 137, 104565, 2024 | | 2024 |
| scRepertoire 2: Enhanced and Efficient Toolkit for Single-Cell Immune Profiling Q Yang, KR Safina, N Borcherding bioRxiv, 2024.12. 31.630854, 2024 | | 2024 |
| DNMT3A-Mutated Stem and Progenitor Cells Contribute to Altered T Cell Activation in Clonal Hematopoiesis KR Safina, S David, KA Romine, KD Mujica, D Ssozi, J Good, N Sariipek, ... Blood 142, 1320, 2023 | | 2023 |
| Identification of genetic changes acquired by replicate lineages of Podospora anserina during long-term submerged cultivation KR Safina, OA Vakhrusheva, GA Bazykin, IS Mazheika, EV Budanova, ... ИТиС 2017, 545-547, 2017 | | 2017 |