| The complete sequence of a human genome S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ... Science 376 (6588), 44-53, 2022 | 2579 | 2022 |
| Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ... Nature Biotechnology, 1-8, 2019 | 1554 | 2019 |
| Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato M Alonge, X Wang, M Benoit, S Soyk, L Pereira, L Zhang, H Suresh, ... Cell, 2020 | 630 | 2020 |
| RaGOO: fast and accurate reference-guided scaffolding of draft genomes M Alonge, S Soyk, S Ramakrishnan, X Wang, S Goodwin, FJ Sedlazeck, ... Genome biology 20 (1), 1-17, 2019 | 616 | 2019 |
| Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing M Alonge, L Lebeigle, M Kirsche, K Jenike, S Ou, S Aganezov, X Wang, ... Genome Biology 23 (1), 1-19, 2022 | 383 | 2022 |
| The genetic and epigenetic landscape of the Arabidopsis centromeres M Naish, M Alonge, P Wlodzimierz, AJ Tock, BW Abramson, A Schmücker, ... Science 374 (6569), eabi7489, 2021 | 295 | 2021 |
| The bracteatus pineapple genome and domestication of clonally propagated crops LY Chen, R VanBuren, M Paris, H Zhou, X Zhang, CM Wai, H Yan, ... Nature Genetics, 1-10, 2019 | 85 | 2019 |
| Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies AM Mc Cartney, K Shafin, M Alonge, AV Bzikadze, G Formenti, ... Nature Methods, 1-9, 2022 | 81 | 2022 |
| Duplication of a domestication locus neutralized a cryptic variant that caused a breeding barrier in tomato S Soyk, ZH Lemmon, FJ Sedlazeck, JM Jiménez-Gómez, M Alonge, ... Nature Plants, 1, 2019 | 78 | 2019 |
| Chromosome-Scale Assembly of the Bread Wheat Genome Reveals Thousands of Additional Gene Copies M Alonge, A Shumate, D Puiu, A Zimin, SL Salzberg Genetics, 2020 | 58 | 2020 |
| The genome sequence and transcriptome of Potentilla micrantha and their comparison to Fragaria vesca (the woodland strawberry) M Buti, M Moretto, E Barghini, F Mascagni, L Natali, M Brilli, A Lomsadze, ... GigaScience 7 (4), 1-14, 2017 | 49 | 2017 |
| Natural genetic diversity in tomato flavor genes L Pereira, M Sapkota, M Alonge, Y Zheng, Y Zhang, H Razifard, ... Frontiers in Plant Science 12, 914, 2021 | 26 | 2021 |
| Establishing Physalis as a new Solanaceae model system enables genetic reevaluation of the inflated calyx syndrome J He, M Alonge, S Ramakrishnan, M Benoit, S Soyk, NT Reem, ... bioRxiv, 2022 | 18 | 2022 |
| Pan-genomics and the structural diversity of plant genomes MC Alonge Johns Hopkins University, 2021 | 1 | 2021 |
| A master regulator of regeneration M Alonge, MC Schatz Science 363 (6432), 1152-1153, 2019 | | 2019 |
Michael C. SchatzBloomberg Distinguished Professor, Johns Hopkins UniversityVerified email at cs.jhu.edu