| Evolution of gene duplication in plants N Panchy, M Lehti-Shiu, SH Shiu Plant physiology 171 (4), 2294-2316, 2016 | 1314 | 2016 |
| Diversity, expansion, and evolutionary novelty of plant DNA-binding transcription factor families MD Lehti-Shiu, N Panchy, P Wang, S Uygun, SH Shiu Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1860 (1), 3-20, 2017 | 108 | 2017 |
| Transcriptional coordination of physiological responses in Nannochloropsis oceanica CCMP1779 under light/dark cycles E Poliner, N Panchy, L Newton, G Wu, A Lapinsky, B Bullard, ... The Plant Journal 83 (6), 1097-1113, 2015 | 87 | 2015 |
| Factors influencing gene family size variation among related species in a plant family, Solanaceae P Wang, BM Moore, NL Panchy, F Meng, MD Lehti-Shiu, SH Shiu Genome biology and evolution 10 (10), 2596-2613, 2018 | 62 | 2018 |
| Combinatorial perturbation analysis reveals divergent regulations of mesenchymal genes during epithelial-to-mesenchymal transition K Watanabe, N Panchy, S Noguchi, H Suzuki, T Hong NPJ systems biology and applications 5 (1), 21, 2019 | 56 | 2019 |
| Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes MY Law, KL Childs, MS Campbell, JC Stein, AJ Olson, C Holt, N Panchy, ... Plant physiology 167 (1), 25-39, 2015 | 56 | 2015 |
| Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana MD Lehti-Shiu, S Uygun, GD Moghe, N Panchy, L Fang, DE Hufnagel, ... Plant physiology 168 (4), 1717-1734, 2015 | 38 | 2015 |
| Prevalence, Evolution, and cis-Regulation of Diel Transcription in Chlamydomonas reinhardtii N Panchy, G Wu, L Newton, CH Tsai, J Chen, C Benning, EM Farré, ... G3: Genes, Genomes, Genetics 4 (12), 2461-2471, 2014 | 35 | 2014 |
| Changes in the daily rhythm of lipid metabolism in the diabetic retina Q Wang, M Tikhonenko, SN Bozack, TA Lydic, L Yan, NL Panchy, ... PloS one 9 (4), e95028, 2014 | 34 | 2014 |
| Integrative transcriptomic analysis reveals a multiphasic epithelial–mesenchymal spectrum in cancer and non-tumorigenic cells N Panchy, C Azeredo-Tseng, M Luo, N Randall, T Hong Frontiers in oncology 9, 1479, 2020 | 29 | 2020 |
| Regulatory divergence in wound-responsive gene expression between domesticated and wild tomato MJ Liu, K Sugimoto, S Uygun, N Panchy, MS Campbell, M Yandell, ... The Plant Cell 30 (7), 1445-1460, 2018 | 28 | 2018 |
| A model-based approach for identifying functional intergenic transcribed regions and noncoding RNAs JP Lloyd, ZTY Tsai, RP Sowers, NL Panchy, SH Shiu Molecular Biology and Evolution 35 (6), 1422-1436, 2018 | 26 | 2018 |
| High‐throughput measurement of plant fitness traits with an object detection method using Faster R‐CNN P Wang, F Meng, P Donaldson, S Horan, NL Panchy, E Vischulis, ... New Phytologist 234 (4), 1521-1533, 2022 | 16 | 2022 |
| Expression and regulatory asymmetry of retained Arabidopsis thaliana transcription factor genes derived from whole genome duplication NL Panchy, CB Azodi, EF Winship, RC O’Malley, SH Shiu BMC Evolutionary Biology 19, 1-17, 2019 | 14 | 2019 |
| Involvement of epithelial–mesenchymal transition genes in small cell lung cancer phenotypic plasticity SM Groves, N Panchy, DR Tyson, LA Harris, V Quaranta, T Hong Cancers 15 (5), 1477, 2023 | 12 | 2023 |
| Comparative single-cell transcriptomes of dose and time dependent epithelial–mesenchymal spectrums N Panchy, K Watanabe, M Takahashi, A Willems, T Hong NAR Genomics and Bioinformatics 4 (3), lqac072, 2022 | 12 | 2022 |
| Using single-cell rna sequencing and microrna targeting data to improve colorectal cancer survival prediction A Willems, N Panchy, T Hong Cells 12 (2), 228, 2023 | 8 | 2023 |
| Early detection of daylengths with a feedforward circuit coregulated by circadian and diurnal cycles N Panchy, AG von Arnim, T Hong Biophysical Journal 119 (9), 1878-1895, 2020 | 8 | 2020 |
| Gene Duplicates: from origins to implications for plant evolution N Panchy, MD Lehti-Shiu, SH Shiu Plant Physiol 523 (10.1104), 16.00523, 2016 | 6 | 2016 |
| Inferring the regulatory interaction models of transcription factors in transcriptional regulatory networks S Awad, N Panchy, SK Ng, J Chen Journal of bioinformatics and computational biology 10 (05), 1250012, 2012 | 6 | 2012 |
