| Opportunities and challenges in long-read sequencing data analysis SL Amarasinghe, S Su, X Dong, L Zappia, ME Ritchie, Q Gouil Genome biology 21 (1), 30, 2020 | 1516 | 2020 |
| Latest techniques to study DNA methylation Q Gouil, A Keniry Essays in biochemistry 63 (6), 639-648, 2019 | 193 | 2019 |
| DNA methylation signatures of the plant chromomethyltransferases Q Gouil, DC Baulcombe PLoS genetics 12 (12), e1006526, 2016 | 187 | 2016 |
| Extensive transcriptomic and epigenomic remodelling occurs during Arabidopsis thaliana germination R Narsai, Q Gouil, D Secco, A Srivastava, YV Karpievitch, LC Liew, ... Genome biology 18, 1-18, 2017 | 178 | 2017 |
| Comprehensive characterization of single-cell full-length isoforms in human and mouse with long-read sequencing L Tian, JS Jabbari, R Thijssen, Q Gouil, SL Amarasinghe, O Voogd, ... Genome biology 22, 1-24, 2021 | 154 | 2021 |
| Using long-read sequencing to detect imprinted DNA methylation S Gigante, Q Gouil, A Lucattini, A Keniry, T Beck, M Tinning, L Gordon, ... Nucleic acids research 47 (8), e46-e46, 2019 | 109 | 2019 |
| Sequence-dependent elasticity and electrostatics of single-stranded DNA: signatures of base-stacking DB McIntosh, G Duggan, Q Gouil, OA Saleh Biophysical journal 106 (3), 659-666, 2014 | 91 | 2014 |
| Environmental and epigenetic regulation of Rider retrotransposons in tomato M Benoit, HG Drost, M Catoni, Q Gouil, S Lopez-Gomollon, D Baulcombe, ... PLoS genetics 15 (9), e1008370, 2019 | 85 | 2019 |
| Single-cell multiomics reveal the scale of multilayered adaptations enabling CLL relapse during venetoclax therapy R Thijssen, L Tian, MA Anderson, C Flensburg, A Jarratt, AL Garnham, ... Blood, The Journal of the American Society of Hematology 140 (20), 2127-2141, 2022 | 69 | 2022 |
| Epigenetic silencing of RIPK3 in hepatocytes prevents MLKL-mediated necroptosis from contributing to liver pathologies SP Preston, MD Stutz, CC Allison, U Nachbur, Q Gouil, BM Tran, ... Gastroenterology 163 (6), 1643-1657. e14, 2022 | 49 | 2022 |
| Benchmarking long-read RNA-sequencing analysis tools using in silico mixtures X Dong, MRM Du, Q Gouil, L Tian, JS Jabbari, R Bowden, PL Baldoni, ... Nature Methods 20 (11), 1810-1821, 2023 | 42 | 2023 |
| The long and the short of it: unlocking nanopore long-read RNA sequencing data with short-read differential expression analysis tools X Dong, L Tian, Q Gouil, H Kariyawasam, S Su, R De Paoli-Iseppi, ... NAR genomics and bioinformatics 3 (2), lqab028, 2021 | 41 | 2021 |
| Large expert-curated database for benchmarking document similarity detection in biomedical literature search P Brown, Y Zhou Database 2019, baz085, 2019 | 41 | 2019 |
| Clonal multi-omics reveals Bcor as a negative regulator of emergency dendritic cell development L Tian, S Tomei, J Schreuder, TS Weber, D Amann-Zalcenstein, DS Lin, ... Immunity 54 (6), 1338-1351. e9, 2021 | 39 | 2021 |
| long-read-tools. org: an interactive catalogue of analysis methods for long-read sequencing data SL Amarasinghe, ME Ritchie, Q Gouil GigaScience 10 (2), giab003, 2021 | 32 | 2021 |
| Paramutation-like features of multiple natural epialleles in tomato Q Gouil, DC Baulcombe BMC genomics 19, 1-15, 2018 | 32 | 2018 |
| SLTAB2 is the paramutated SULFUREA locus in tomato Q Gouil, O Novák, DC Baulcombe Journal of Experimental Botany 67 (9), 2655-2664, 2016 | 28 | 2016 |
| Smchd1 is a maternal effect gene required for genomic imprinting I Wanigasuriya, Q Gouil, SA Kinkel, A Tapia del Fierro, T Beck, EA Roper, ... Elife 9, e55529, 2020 | 26 | 2020 |
| Live cell imaging reveals the relocation of dsRNA binding proteins upon viral infection DA Barton, EF Roovers, Q Gouil, GC da Fonseca, RS Reis, C Jackson, ... Molecular plant-microbe interactions 30 (6), 435-443, 2017 | 20 | 2017 |
| NanoMethViz: An R/Bioconductor package for visualizing long-read methylation data S Su, Q Gouil, ME Blewitt, D Cook, PF Hickey, ME Ritchie PLOS Computational Biology 17 (10), e1009524, 2021 | 19 | 2021 |
Matthew E RitchieThe Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au