| PhyloBayes MPI. Phylogenetic reconstruction with infinite mixtures of profiles in a parallel environment N Lartillot, N Rodrigue, D Stubbs, J Richer Systematic Biology 62 (4), 611-615, 2013 | 804 | 2013 |
| Heterotachy and long-branch attraction in phylogenetics H Philippe, Y Zhou, H Brinkmann, N Rodrigue, F Delsuc BMC evolutionary biology 5, 1-8, 2005 | 336 | 2005 |
| Genomics of Adaptation during Experimental Evolution of the Opportunistic Pathogen Pseudomonas aeruginosa A Wong, N Rodrigue, R Kassen Public Library of Science 8 (9), e1002928, 2012 | 207 | 2012 |
| Evolutionary insight from whole‐genome sequencing of experimentally evolved microbes JR Dettman, N Rodrigue, AH Melnyk, A Wong, SF Bailey, R Kassen Molecular ecology 21 (9), 2058-2077, 2012 | 194 | 2012 |
| Mutation-selection models of coding sequence evolution with site-heterogeneous amino acid fitness profiles N Rodrigue, H Philippe, N Lartillot Proceedings of the National Academy of Sciences 107 (10), 4629-4634, 2010 | 155 | 2010 |
| The effect of selection environment on the probability of parallel evolution SF Bailey, N Rodrigue, R Kassen Molecular biology and evolution 32 (6), 1436-1448, 2015 | 145 | 2015 |
| Evolutionary genomics of epidemic and nonepidemic strains of Pseudomonas aeruginosa JR Dettman, N Rodrigue, SD Aaron, R Kassen Proceedings of the National Academy of Sciences 110 (52), 21065–21070, 2013 | 141 | 2013 |
| Site interdependence attributed to tertiary structure in amino acid sequence evolution N Rodrigue, N Lartillot, D Bryant, H Philippe Gene 347 (2), 207-217, 2005 | 122 | 2005 |
| Assessing site-interdependent phylogenetic models of sequence evolution N Rodrigue, H Philippe, N Lartillot Molecular biology and evolution 23 (9), 1762-1775, 2006 | 92 | 2006 |
| Clonal evolution and genome stability in a 2500-year-old fungal individual JB Anderson, JN Bruhn, D Kasimer, H Wang, N Rodrigue, ML Smith Proceedings of the Royal Society B 285 (1893), 20182233, 2018 | 84 | 2018 |
| Whole genome sequencing and comparative genomics of closely related Fusarium Head Blight fungi: Fusarium graminearum, F. meridionale and F. asiaticum S Walkowiak, O Rowland, N Rodrigue, R Subramaniam BMC genomics 17, 1-15, 2016 | 79 | 2016 |
| Site-heterogeneous mutation-selection models within the PhyloBayes-MPI package N Rodrigue, N Lartillot Bioinformatics 30 (7), 1020-1021, 2014 | 71 | 2014 |
| Evaluation of the models handling heterotachy in phylogenetic inference Y Zhou, N Rodrigue, N Lartillot, H Philippe BMC Evolutionary Biology 7, 1-13, 2007 | 66 | 2007 |
| Microevolution of symbiotic Bradyrhizobium populations associated with soybeans in east North America J Tang, ESP Bromfield, N Rodrigue, S Cloutier, JT Tambong Ecology and Evolution 2 (12), 2943-2961, 2012 | 62 | 2012 |
| Computational methods for evaluating phylogenetic models of coding sequence evolution with dependence between codons N Rodrigue, CL Kleinman, H Philippe, N Lartillot Molecular Biology and Evolution 26 (7), 1663-1676, 2009 | 61 | 2009 |
| Uniformization for sampling realizations of Markov processes: applications to Bayesian implementations of codon substitution models N Rodrigue, H Philippe, N Lartillot Bioinformatics 24 (1), 56-62, 2008 | 61 | 2008 |
| Statistical potentials for improved structurally constrained evolutionary models CL Kleinman, N Rodrigue, N Lartillot, H Philippe Molecular biology and evolution 27 (7), 1546-1560, 2010 | 59 | 2010 |
| Population divergence in the wheat leaf rust fungus Puccinia triticina is correlated with wheat evolution M Liu, N Rodrigue, J Kolmer Heredity 122, 443-453, 2014 | 44 | 2014 |
| Detecting adaptation in protein-coding genes using a Bayesian site-heterogeneous mutation-selection codon substitution model N Rodrigue, N Lartillot Molecular Biology and Evolution 34 (1), 204-214, 2017 | 43 | 2017 |
| On the statistical interpretation of site-specific variables in phylogeny-based substitution models N Rodrigue Genetics 193 (2), 557-564, 2013 | 42 | 2013 |