| Full-length transcriptome assembly from RNA-Seq data without a reference genome MG Grabherr, BJ Haas, M Yassour, JZ Levin, DA Thompson, I Amit, ... Nature biotechnology 29 (7), 644-652, 2011 | 18196 | 2011 |
| UCHIME improves sensitivity and speed of chimera detection RC Edgar, BJ Haas, JC Clemente, C Quince, R Knight Bioinformatics 27 (16), 2194-2200, 2011 | 14952 | 2011 |
| Analysis of the genome sequence of the flowering plant Arabidopsis thaliana S Kaul, HL Koo, J Jenkins, M Rizzo, T Rooney, LJ Tallon, T Feldblyum, ... Nature 408 (6814), 796-815, 2000 | 11330 | 2000 |
| Structure, function and diversity of the healthy human microbiome C Huttenhower, D Gevers, R Knight, S Abubucker, JH Badger, ... nature 486 (7402), 207, 2012 | 10878* | 2012 |
| De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis BJ Haas, A Papanicolaou, M Yassour, M Grabherr, PD Blood, J Bowden, ... Nature protocols 8 (8), 1494-1512, 2013 | 8294 | 2013 |
| Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons BJ Haas, D Gevers, AM Earl, M Feldgarden, DV Ward, G Giannoukos, ... Genome research 21 (3), 494-504, 2011 | 3593 | 2011 |
| Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments BJ Haas, SL Salzberg, W Zhu, M Pertea, JE Allen, J Orvis, O White, ... Genome Biol 9 (1), R7, 2008 | 3026 | 2008 |
| Next-generation characterization of the cancer cell line encyclopedia M Ghandi, FW Huang, J Jané-Valbuena, GV Kryukov, CC Lo, ... Nature 569 (7757), 503-508, 2019 | 2847 | 2019 |
| A framework for human microbiome research BA Methé, KE Nelson, M Pop, HH Creasy, MG Giglio, C Huttenhower, ... Nature 486, 215-221, 2012 | 2511* | 2012 |
| Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data MG Grabherr, BJ Haas, M Yassour, JZ Levin, DA Thompson, I Amit, ... Nature biotechnology 29 (7), 644, 2011 | 2303 | 2011 |
| The genome of the African trypanosome Trypanosoma brucei M Berriman, E Ghedin, C Hertz-Fowler, G Blandin, H Renauld, ... Science 309 (5733), 416-422, 2005 | 2037 | 2005 |
| Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies BJ Haas, AL Delcher, SM Mount, JR Wortman, RK Smith Jr, LI Hannick, ... Nucleic acids research 31 (19), 5654-5666, 2003 | 1995 | 2003 |
| The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease NM El-Sayed, PJ Myler, DC Bartholomeu, D Nilsson, G Aggarwal, ... Science Signalling 309 (5733), 409, 2005 | 1813 | 2005 |
| Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans BJ Haas, S Kamoun, MC Zody, RHY Jiang, RE Handsaker, LM Cano, ... Nature 461 (7262), 393-398, 2009 | 1742 | 2009 |
| Corrigendum: Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus WC Nierman, A Pain, MJ Anderson, JR Wortman, HS Kim, J Arroyo, ... Nature 439 (7075), 502-502, 2006 | 1694* | 2006 |
| Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus WC Nierman, A Pain, MJ Anderson, JR Wortman, HS Kim, J Arroyo, ... Nature 438 (7071), 1151-1156, 2005 | 1694 | 2005 |
| Genome sequence of Aedes aegypti, a major arbovirus vector V Nene, JR Wortman, D Lawson, B Haas, C Kodira, ZJ Tu, B Loftus, Z Xi, ... Science Signalling 316 (5832), 1718, 2007 | 1363 | 2007 |
| The TIGR rice genome annotation resource: improvements and new features S Ouyang, W Zhu, J Hamilton, H Lin, M Campbell, K Childs, ... Nucleic acids research 35 (suppl 1), D883-D887, 2007 | 1321 | 2007 |
| The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus) R Ming, S Hou, Y Feng, Q Yu, A Dionne-Laporte, JH Saw, P Senin, ... Nature 452 (7190), 991-996, 2008 | 1271 | 2008 |
| The draft genome of the transgenic tropical fruit tree papaya R Ming, S Hou, Y Feng, Q Yu, A Dionne-Laporte, JH Saw, P Senin, ... Carica papaya, 991-996, 2008 | 1271* | 2008 |
Jennifer WortmanVice President, Clinical Discovery and Research Technologies, Seres TherapeuticsVerified email at serestherapeutics.com